Crassostrea gigas (Pacific oyster): 105323590
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Entry
105323590 CDS
T03920
Name
(RefSeq) exodeoxyribonuclease
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
105323590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crg03400
]
105323590
Enzymes [BR:
crg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
105323590
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
105323590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
TLP-20
Motif
Other DBs
NCBI-GeneID:
105323590
NCBI-ProteinID:
XP_011420949
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Position
LG5:complement(55482466..55494394)
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AA seq
381 aa
AA seq
DB search
MLNILPWHQILFSNFVRGASRINLRVLSSSDKMPPKRKAKKDDGKTPAPEEGSVGDTAQE
DKPSPSKKQKVDEEEIGKKGKGGKGKKAPPRKEDTIETLPEGTDTSFPTEVNPEAKTADG
RKFTLKIASWNLNGIRAWYDKDKMSYIKESSPDILCVQETKCQEDQLPPGVLDKDYHIYW
SPAEKAGYAGTGLYSKKKPIKVTYGLGIPKHDDEGRVITAEYEDFYMVNAYVPNSGKGLV
RLKYRTEEWDCDFTDYLKKLDAKKPVIMCGDLNVSHTPVDLKNPTSNRNKTPGYTDKERE
GFSKLLEEGFLDSFRVLYPNARDCWSFWTYMMNARAKNIGWRLDYFVISKRLQKDLCDSI
IQQKVMGSDHCPIMLLMAGLK
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatatcttgccgtggcatcaaattttgttttccaattttgtaaggggtgcttcg
aggataaatcttagagtgttgtcctcgtctgacaaaatgccacccaaaagaaaggcaaag
aaagatgatggaaagacccctgctccagaagaaggcagtgtcggagacacagctcaagag
gataagccatcgcccagcaaaaagcagaaagtagatgaagaagaaataggaaagaaaggt
aaaggagggaagggaaagaaagccccgcccaggaaggaggacaccatcgagacactccct
gagggaacagacacctcattcccgaccgaggtcaaccccgaggccaagacagcagacgga
cggaagttcaccctcaagattgcctcatggaacttaaatggaatccgggcatggtatgat
aaagacaagatgtcgtacatcaaggagtcatcgcccgacatcctctgtgtacaggagacc
aagtgtcaggaggatcagctacccccgggggtgctggacaaggactaccacatctactgg
tcgcccgctgagaaagcgggctatgctggcactgggctctacagcaagaagaagcccatc
aaggtcacctacgggcttggtatacctaagcatgatgatgaggggagggttatcactgcc
gagtatgaggacttctacatggtgaatgcatatgtgccaaattctggtaaaggtttggtt
cgtctgaagtacaggacagaggagtgggactgtgacttcactgattacctgaagaagctg
gacgccaagaagccagtcatcatgtgtggggacctcaacgtgtcccacactcctgtagat
ttgaagaacccgaccagcaacaggaataagacgccgggctacactgacaaggagagggag
ggcttcagtaagctgcttgaggagggcttcctggactcgttccgcgtcctctaccccaac
gcccgcgactgctggtccttctggacctacatgatgaacgcccgcgccaaaaacattggc
tggcggctggattacttcgtgatctccaagagactccagaaggacctgtgtgacagcatt
atccaacagaaggtcatgggcagcgaccactgtcctatcatgttactgatggcggggctc
aagtga
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