KEGG   Crassostrea gigas (Pacific oyster): 105332688
Entry
105332688         CDS       T03920                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03030  DNA replication
crg03410  Base excision repair
crg03420  Nucleotide excision repair
crg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105332688
   03410 Base excision repair
    105332688
   03420 Nucleotide excision repair
    105332688
   03430 Mismatch repair
    105332688
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crg03032]
    105332688
   03036 Chromosome and associated proteins [BR:crg03036]
    105332688
   03400 DNA repair and recombination proteins [BR:crg03400]
    105332688
DNA replication proteins [BR:crg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    105332688
  DNA Replication Termination Factors
   ELG1-RFC complex
    105332688
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    105332688
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     105332688
  Check point factors
   HRAD17(Rad24)-RFC complex
    105332688
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_30 AAA_assoc_2 AAA_19 Rad17 AAA_16 AAA_22 AAA_24 DUF815 AAA_11 ATPase_2 Gp44_lid ResIII Mg_chelatase DNA_pol3_delta RuvB_N SLFN-g3_helicase CtIP_N Kinesin bpMoxR AAA_7 AAA_5 UvrD-helicase
Other DBs
NCBI-GeneID: 105332688
NCBI-ProteinID: XP_019924652
LinkDB
Position
LG4:complement(49719414..49741503)
AA seq 360 aa
MHPFFKPREAGTTSKDPKSLEAAGSGKGGKSKQKHVPWVEKFRPRSVDEVAYQDEVVAVL
KKSLEGSDLPNLLFYGPPGTGKTSTILAAARSLFGAEMMKLRVLELNASDERGINVVREK
VKKFAQTTASGTRPDGKPCPPFKIIILDEADSMTAPAQAALRRTMEKESKSTRFCLICNY
VSRIIEPIASRCAKFRFKPLADQILTERLQEICEAEKISYDKESIKALIDSSEGDMRKAI
TYLQSVARLKGDEEVTEADVFEIAGVISDETIDVLIKVCHSNSYEKLEKKVQEVMFEGHS
AAQIITQLHDKTVQLDNLSDQQKSVICEKLAVVDKCLMDGADEYLQLMALFTTMMREICR
NT seq 1083 nt   +upstreamnt  +downstreamnt
atgcatcccttttttaagccccgagaggctggaacaacttcaaaagacccaaaatcactg
gaagcagctggttcagggaaaggaggaaaatcaaagcagaaacatgtgccatgggtggag
aaatttcggcctcgatccgtggacgaagttgcctatcaagatgaagttgttgcggtcctg
aagaaatccctggaaggatcagatcttcccaaccttttgttctatggacccccgggaacc
ggaaaaacttccaccattttggctgctgcaagatctttgtttggagctgagatgatgaaa
ctgagagtcttggagttaaatgcttctgatgaacgtggaataaatgtagttcgagaaaaa
gtgaaaaaatttgcccagactacagcaagtggaacgagaccagatgggaagccctgccct
ccatttaagatcatcattctggatgaggcagattcaatgacggcaccggctcaggctgcc
ctccgcagaacgatggagaaggagagtaaatcgacccggttttgtctgatctgtaactat
gtcagccgcatcattgagcccattgcttcccgctgtgccaagttccggttcaaacctcta
gcagatcagattctcacagagagattgcaggaaatttgtgaggcagaaaaaataagctat
gacaaggagtccatcaaagccttgattgacagttcagagggcgatatgagaaaggcgata
acttaccttcagagtgtggctcgattaaaaggagatgaggaagtcacagaggcagatgtc
ttcgaaatagctggggttatatcagacgaaacgattgacgtgttaatcaaagtctgtcac
tccaattcttacgaaaagctcgagaaaaaagttcaggaggtaatgtttgaggggcattct
gcagctcagatcatcacacagcttcatgacaagactgtgcaactggacaacctcagtgac
cagcagaagtcagttatctgtgaaaaactggcagtggtggacaagtgtttgatggatggc
gcggacgagtacttacagttgatggctctatttaccaccatgatgcgggagatctgtcgc
tga

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