KEGG   Cryobacterium sp. LW097: B7495_07570Help
Entry
B7495_07570       CDS       T04908                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cry  Cryobacterium sp. LW097
Pathway
cry03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cry00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B7495_07570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cry03400]
    B7495_07570
Enzymes [BR:cry01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B7495_07570
DNA repair and recombination proteins [BR:cry03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B7495_07570
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ASD21969
UniProt: A0A1Z3LIH8
LinkDB All DBs
Position
complement(1640539..1643040)
Genome map
AA seq 833 aa AA seqDB search
MATGAGAAGNGAVSADGAQREVVTVGGRRVTLTHLDKVMYPETGTTKADILGYYAAVADA
LIRHSRDRPATRKRWVHGVGTPQEPGQVFFQKNLAEGTPDWVERRELAHKARTTVYPLVN
DLATLTWLAQIGTLEIHVPQWRFDVAGAPARPDRLVLDLDPGEGVGLAECAEVARWARAL
LLDMGLDTLPVTSGSKGIHLYAALDGSHTSEQVGQVAHELARALEADHPGEVLSAMTRSL
RDGKVFVDWSQNSANKTTIAPYSLRGLLRPLVAAPRTWRELESPGLEQLDYRQVLKRLER
RPDLLGPVADAIDAGAGSASRTDEDRLHQYRSKRDARRTPEPVPTATPPTPSGGGGASFV
IQEHHARALHFDLRLEQGGVLVSWALPKGVPADPTHNHLAVHTEDHPLEYLEFQGDIPAG
EYGAGTMSIWDSGTYSLQKWRDDEVIVTLHGKPDGGLGGAEHEFALIRTGGAGSRNWLIH
LMKPKRSIPAGWGPAEARYSPMLARLGSLRELSAESDWAYEMKWDGIRMLAYLDGGGKVR
FLTRNGNDVTASFPELVDDLRTAVGTGGAVLDGEVVALDTTNRPDFSLLQTRLGLTDEGD
VRRAQRRAPVHYFVFDLLENDGAALVDQPYAERRAALEAGVTATGTVQVPPSFSGDAATV
LATSRQLGLEGLIAKETGSTYTSGRRTDRWVKIKHVRAQEVVIGGWRPGNGHRGDTFGSL
LVGVPTAGDTARLRYAGRIGTGFRDRDLTSLRRRLDELPTSDTPFDDVPSEEASDAVWVR
PVLVGEVDFAGWTPAGRLRHPSWRGLRPDKAPSDVVLDEAMSADAVPEGTAPR
NT seq 2502 nt NT seq  +upstreamnt  +downstreamnt
atggcaactggcgcgggggctgcggggaatggcgctgtgagcgccgacggcgctcagcgg
gaggtcgtgacggtgggcggccgacgggtcaccctcacccatctggacaaggtgatgtac
ccggagaccggcaccaccaaggccgacatcctgggctactacgcggcggtcgcggatgcg
ctcatccgccattcgcgggaccggccggcgacccgcaagcgctgggtgcacggcgtgggc
acgccccaggagcccgggcaggtgttcttccagaagaacctggccgagggcacgccggac
tgggtggagcgccgggaactcgctcacaaggcgcgcaccaccgtgtacccgctggtgaac
gacctggccaccctcacctggctcgcccagatcggcaccctggagatccacgtgccgcag
tggcggttcgacgtggcgggcgccccggcccgccccgaccggctggtgctggacctggac
cccggcgagggcgtcggcctcgccgagtgcgcggaggtggcccggtgggccagggccctg
ctgctggacatgggcctggacaccctgccggtgaccagcgggagcaagggcatccacctg
tatgcggcgctggacggcagccacacctcggagcaggtgggccaggtggcgcatgaactc
gcgcgggcgttggaagcggaccatccaggagaggtgctcagcgcgatgacccggtcgctg
cgggacgggaaggtcttcgtggactggagccagaacagcgcgaacaagaccaccatcgcg
ccgtacagcctgcgcggactgctgcggccgctggtggcggcaccgcgaacctggcgggag
ctggagtcgcccggactggagcagctggattaccggcaggtgctgaaacgactggaacga
cgccccgacctgctgggcccagtagcggacgccatcgacgcgggcgccggctcggcctca
cggaccgacgaggaccgcctgcaccagtaccgcagcaagcgcgacgcccggcgcacccct
gagcccgtgccgacggcgacaccgccgacgccctccggtggtggcggggcatcgtttgtg
atccaggagcaccacgccagggccctgcacttcgacctgcgcctggaacagggcggcgtg
ctggtctcgtgggcgctgcccaagggcgtgccggccgaccccacccacaaccacctggcc
gtgcacaccgaggatcacccgctggagtatctcgagttccagggtgatattccggcggga
gagtacggcgccggcaccatgtcgatctgggattccggcacctattcgctgcagaaatgg
cgggacgatgaggtaatcgtcaccctgcacggcaaaccggacggcggtctgggcggtgcc
gaacacgagttcgcgctcatccggaccggcggtgcggggtcgcgcaactggctgatccac
ctgatgaaaccgaaacgatcgatcccggccggctggggtcctgccgaggcccgatactcc
cccatgctcgccaggctgggcagcctgcgcgagctgtctgcggagtccgactgggcctac
gagatgaagtgggatggcatccggatgctggcctacctcgacggcggcgggaaggtgcgc
ttcctcacccggaacggcaacgacgtcacggcatccttccccgagcttgtggacgacctg
cgaacggccgtgggaaccggcggcgccgtgctcgacggggaggtcgtggcccttgacacc
acaaaccggcccgacttctcactgctgcagaccaggctcgggctcaccgatgagggtgat
gtgcgccgggcgcagcggcgggcccccgtgcactatttcgtcttcgacctgctcgagaac
gacggcgctgctctggtcgaccagccgtacgcggagcgccgggcggctttggaggccggt
gtgacggccaccggaaccgtgcaggtgccgccgtccttctccggcgacgccgccacggtg
ctggccaccagccggcaactcggcctggagggactgatcgccaaggagaccggcagtacc
tacacgagcggacgccgcaccgaccggtgggtgaagatcaaacacgtcagggcacaggag
gtcgtgatcggcggctggcggcccggaaacgggcaccgcggcgacaccttcggctcgctt
ctcgtgggcgtgccgacggccggcgacacagcccgactgcggtacgccgggcggatcggc
accggcttccgcgaccgcgacctgacgagcctgcgccgccggctcgacgagctgcccacg
tcggacaccccgttcgacgacgttccgtcggaggaggcgtccgacgccgtgtgggtgcgc
ccggtgctcgtgggcgaagtggacttcgccgggtggacaccggccggccggctgcggcac
ccgagctggcggggcctgcgcccagacaaagcgcccagcgatgtggtgctcgacgaggcg
atgtcggcggacgcggtgccggaggggacggcgccccgatga

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