Chromobacterium rhizoryzae: D1345_15670
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Entry
D1345_15670 CDS
T05688
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
crz
Chromobacterium rhizoryzae
Brite
KEGG Orthology (KO) [BR:
crz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crz03016
]
D1345_15670
Enzymes [BR:
crz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D1345_15670
Transfer RNA biogenesis [BR:
crz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D1345_15670
Prokaryotic type
tRNA splicing ligases
D1345_15670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
NAD_binding_9
Motif
Other DBs
NCBI-ProteinID:
AXT47536
LinkDB
All DBs
Position
complement(3451222..3452448)
Genome browser
AA seq
408 aa
AA seq
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MTVNPYQTLQAPNGAPIKMWTQGVPVEDAAREQLLQTAQLPFIFRHLAVMPDVHLGKGST
IGSVIPTVGAVIPAAVGVDIGCGMMAARTTLSAADLPDQLGGLRGAIEAAVPHGRSSPRS
GRDKGAWQRPPAGVDAAWARLLPGFDLIAAKYPKLAKTNNHLHLGTLGTGNHFVEVCLDE
ADRVWFMLHSGSRGVGNAIGNLFIELAQADMRRHIANLPHRELAYFEEGSPHFNDYVEAV
GWAQDYARQNRQLMMRHVVDAARGVIAKPFDAEVEAVNCHHNYVQRETHFGRDVLVTRKG
AVAAHKGQLGIIPGSMGAKSFIVRGLGNKEAFCSCSHGAGRAMSRTEAKRRFDLEDQRRA
TAHVECRKDADVIDEIPMAYKDIDAVMAAQSSLVEVVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgaatccctaccaaaccctgcaagcgcccaatggcgcgccaatcaagatgtgg
acgcaaggcgtcccggtggaggacgccgcgcgcgagcaactgctgcaaaccgcgcagctg
ccttttatcttccggcacctggcggtgatgccggacgtgcatctgggcaagggctccacc
atcggcagcgtgatccccaccgtgggcgccgtcattccggcggcggtgggcgtggacatc
ggctgcggaatgatggctgcgcgtaccacgctgagcgccgcggatttgccggaccaactg
ggcggcttgcgcggcgccatcgaagccgccgtgccgcacggccgcagttccccccgctcc
gggcgggacaagggcgcctggcagcgaccgccggccggcgtggacgccgcctgggcgcgg
ctgctgccgggcttcgacctcatcgcggccaaatatcccaagctggcgaaaaccaataac
cacctccacctgggcacgctgggcaccggcaatcacttcgtcgaagtgtgcctggacgag
gcggaccgggtctggttcatgctgcactccggttcgcgcggcgtgggaaacgccatcggc
aacctgttcattgaactggcccaggcggatatgcgccggcacatcgccaacttgccgcac
cgcgaactggcctacttcgaagaaggcagccctcatttcaacgactacgtggaagccgtg
ggttgggctcaggactatgcgcgtcaaaaccgtcaactgatgatgcgccatgtggtggac
gccgcgcgcggcgtgatcgccaagcccttcgacgccgaagtggaagcagtgaactgccac
cacaactacgtgcagcgcgagacccactttggccgagacgtgctagtcacgcgcaagggc
gcggtggccgcccacaagggccagctgggcatcatccccggctccatgggcgccaagagc
ttcatcgtgcgcggcctgggcaataaggaggccttctgttcctgcagccacggagccggc
cgcgcgatgagccgcaccgaagccaagcgccgtttcgatctggaagaccagcggcgcgcc
accgcccacgtggaatgccgcaaggacgccgacgtgatcgacgaaatcccgatggcttac
aaagacatcgacgcggtaatggcggcgcagtccagcctggtggaagtggtgcataccttg
cgccaggtggtctgcgtgaaagggtga
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