Camelina sativa (false flax): 104698999
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Entry
104698999 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
3.6.4.13
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104698999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104698999
03009 Ribosome biogenesis [BR:
csat03009
]
104698999
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 related factors
104698999
Complex B
104698999
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104698999
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104698999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ABC_tran
PhoH
TsaE
FtsK_SpoIIIE
T2SSE
AAA_7
AAA_29
ATPase
AAA_30
SRP54
AAA_24
NACHT
TrwB_AAD_bind
Decorin_bind
AAA_16
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
104698999
NCBI-ProteinID:
XP_010412666
LinkDB
All DBs
Position
6:complement(13278268..13279233)
Genome browser
AA seq
312 aa
AA seq
DB search
MVNSARYFEIQEERRNLPVWVHKDEFLQALKENQMVILVGDTGSGKTTQIPQFVLEAVVY
ENPNPGGTARLVGCTQPRRVAAMSAARRVAEEMDAVIGEEVGYTVRFDDCSSSKTVLKYL
TDGMLLREALVDPLLSKYKAIILDEAHERSIATDLLFSILEKALTSRPALKLVVMSSTLY
AHELSHYFSGHNVPLIEVPGRLHPVEIVYTRDPVTDYLEAAVRKVIQIHMCEPPGDVLVF
LTGEEEIEDACSRIFHKLGDQVKVVPLYSFLPPAMQQRVFDPTPHPVRKIVVSTNIAKTS
LPIDGIVYVVEC
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactctgcgaggtatttcgaaatacaagaggaacgtaggaacctaccagtatgg
gtacacaaagacgagtttctccaagctctgaaggaaaatcagatggtgatactggtgggt
gatacgggcagtggtaagacaacgcaaatcccacagttcgttttagaagctgtggtctat
gaaaaccctaatcctggtgggactgcgaggttggttgggtgcacgcagcctcgtagagtt
gcagcgatgtctgcggcccgccgagttgctgaagagatggatgcagtgatcggtgaagaa
gtcggttacacagtccgtttcgacgattgcagcagctccaaaaccgtgctcaagtacctg
accgatggaatgcttctgagagaagcactggtggatccgctcttatcaaaatacaaagcc
atcattctggacgaggcccacgaaagaagtatagccacggatttgctttttagtattctt
gaaaaagccttgactagccggcctgctcttaagctggttgtgatgagttcaaccctatac
gcccacgagctcagccactattttagcggtcataatgtgcctctcatcgaagtcccaggt
aggctccatccagtggagatcgtttatactcgagatcctgtgacggactatctcgaggct
gctgtacgcaaagttatccagattcacatgtgtgagccacctggtgatgttcttgttttc
ctaaccggggaagaagagattgaagatgcttgcagcaggatcttccataagctcggagat
caagtcaaagtcgtgccactgtattccttcctcccgcctgccatgcaacagagggttttc
gatcccacacctcatcccgtgagaaagattgtcgtctccaccaacattgcaaagacttct
ctacccatcgacgggattgtttacgtcgttgaatgttga
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