Camelina sativa (false flax): 104706965
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Entry
104706965 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 3, chloroplastic isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
3.6.4.13
]
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csat03009
]
104706965
03036 Chromosome and associated proteins [BR:
csat03036
]
104706965
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104706965
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104706965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
zf-CCHC
CMS1
YgbB
zf-CCHC_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104706965
NCBI-ProteinID:
XP_010421509
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Position
8:complement(11298171..11302076)
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AA seq
747 aa
AA seq
DB search
MASTVGVPSLYQVPHLEISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRLIHSSSLLVPS
AVATPNSVLSEEAFKSLGLSDQDDEFDLDGDNNVEADDGEELAISKLSLPQRLEESLEKR
GITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKRLTEQAGDYTAFRRSGRL
PKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRII
DLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPSKRQSMLFSATMPTWVKKL
ARKYLDNPLNIDLVGDKDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQT
KRDADEVSLALSNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVD
LVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPT
VGDLLESSADQVVATLNGVHPDSIKFFSATAQKLFEEKGTDALAAALAHLSGFSQPPSSR
SLLSHEKGWVTLQLIRDPANSRGFFSARSVTGFLSDVYRSAADEVGKIFLIADERVQGAV
FDLPEEIAKALLEKEVPEGNSLSLITKLPPLQDDGPSSDNYGRFSSRDRMPRGGGGRGSR
GGRGGSSRGRDSWGGDDDRGSRRSSGGGSSWSRGGSSSRGSSDDWLISGRSSSSGRAPSR
ERSFGGSCFICGKSGHRATDCPDKRGF
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacggtaggagttccatcgctttaccaagtccctcaccttgaaatctcaaaa
cccaattccaaaaagaggtctaattgcttatctttatctctggataagcctttcttcact
cccttatctcttgttcgtagaactcgtcttatccactcctcttctcttcttgttccttct
gctgtcgctactcctaactctgttctcagtgaagaagctttcaaaagtcttggcctttct
gaccaggacgacgaattcgaccttgacggtgacaacaacgttgaagccgatgatggtgaa
gagctcgctatctctaaacttagtttgcctcagcgtcttgaagagtctcttgagaagcgt
ggtatcactcacctcttccccattcagagagctgtgttggtacctgctctggaaggacgt
gacattatagctcgtgcaaagacaggaactgggaagactctagcttttggtatccctatc
attaaacgacttactgagcaagctggagactacactgctttcaggaggtctggtcgtctt
cctaagttccttgtccttgcaccgactcgtgaactggcgaagcaagtggagaaggagatt
aaggagtctgcaccttatttgagcactgtttgtgtttatggtggggtttcttacaccatt
cagcagagtgctctgactcgtggtgttgatgttgttgttggaactcctggaaggatcatt
gatttgattgaaggaaggagcctcaagttgggagaagttgagtatttggtacttgatgaa
gctgatcagatgcttgctgttgggttcgaggaggctgtggaatcgattcttgagaatctt
ccatcgaagcgacaaagcatgcttttctcagcaactatgcctacttgggtcaagaagttg
gcgaggaagtaccttgacaatcccttgaatatcgatctggttggagacaaagatgagaag
ctcgcagaggggatcaaactttatgcaatcgcaaccacatctacatcaaaacgcactatt
ctaagcgaccttataacagtgtatgcaaagggtggcaagaccattgtatttacccaaaca
aaaagagatgcagacgaggtgtctctggcattgtcaaacagtatagcttccgaggcactt
catggagacatttctcagcatcaaagagaaagaacactcaatggttttcgccaaggaaaa
ttcacagttctagttgccactgatgtcgcatctcgtggacttgacatcccaaacgtagat
ctggttatccactatgaacttcctaatgacccagagacttttgtgcaccgttctggtcgt
actgggcgtgcagggaaagaaggctcagccattctcatgcacaccagcagccaaaagaga
acagtgaggtctctggagcgtgacgtaggctgccattttgaatttattagcccaccaacc
gttggagacttgttggaatcttcagcagaccaagtggtggccacactaaatggtgttcac
cctgactctatcaagtttttctcggcaactgctcaaaaactatttgaggaaaaaggaaca
gatgctttagctgcagctctagctcaccttagtggtttctctcagccaccttcatcgaga
tctctcctcagtcatgagaagggatgggtgactttgcagttgatacgagatccagcgaac
tctagaggtttcttctctgcgaggtctgtcactggttttctttctgatgtttacagatca
gctgcagatgaagttgggaagatcttcttgatcgcagatgagagggtccaaggagctgtt
tttgatctaccagaggaaatcgcaaaagcgctcctagagaaagaagtgccagaaggaaac
agtttatccctgataacaaagttgcctccactgcaagatgatggaccttctagtgataac
tatggacggttctctagcagagacaggatgcctagaggaggaggaggtagagggtcaaga
ggcggtagaggaggatcatcaagaggccgtgatagttggggaggtgatgatgacagagga
agtagaaggagcagtggcggaggaagcagctggtcccgtggtggtagtagttccagagga
agttctgatgattggttgatcagtggcagaagttcatcaagcggcagagctccttcccga
gagagaagttttggagggtcttgcttcatttgtgggaaatcagggcacagggcaacagat
tgtcctgacaagagagggttttag
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