Camelina sativa (false flax): 104712537
Help
Entry
104712537 CDS
T05044
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104712537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104712537
Enzymes [BR:
csat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104712537
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104712537
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104712537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
FTP
zf-MYND
Motif
Other DBs
NCBI-GeneID:
104712537
NCBI-ProteinID:
XP_019084939
LinkDB
All DBs
Position
9:complement(27326959..27333650)
Genome browser
AA seq
596 aa
AA seq
DB search
MLSVTRVHLPSEIPIVGCELTPYVLLRRPDKTPTTDDVPESAPLEGHFLKYRWYRVQSDK
KVAICSVHPSEPATLQCLGCLKSKVPVSKSFHCSTKCFSDAWQHHRVLHERAASAAATEG
NDEEELLRLNSSGSGSGILSTSGSLTNVYPAAITQKTGAGGETLVEVGRSKTYTPMADDI
GHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLIPVNGADVIGQLDSNGRPF
SMGSFTVLSYNILADTYASSDIYSYCPAWALAWTYRRQNLLREIVKYRADIVCLQEVQND
HFDEFFAPELDKHGYQALFKRKTNEVYVGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAA
QSLTEALIPAVTQKKTALNRLVKDNVALIVVLEAKFGNQAADNPGKRQLLCVANTHVNVS
HELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHSLLAMGKVDPLHPDLM
VDPLGILRPHTKLTHQLPLVSAYSSFARMGGSLIAEQQRRRMDPASNEPLFTNCTRDFIG
TLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCMPRARR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgcttagcgttacacgagtgcatctaccgtcggagatacctattgttggatgtgaactt
actccgtacgttcttctccgccggcctgataagactcccaccaccgatgatgtacctgaa
tcagctccgcttgaaggtcacttcttaaagtacagatggtatcgggtacagagtgataaa
aaagttgctatttgtagtgtgcatccatctgagccggctacattgcagtgtttgggatgt
ttaaagtctaaggttcctgtttccaaaagtttccactgttctaccaagtgcttttcagat
gcgtggcagcatcaccgtgtgttgcacgagcgtgctgccagtgctgctgctacagaaggg
aatgatgaagaagagttgcttcgtttgaatagttcagggtctggatctggcattctcagc
accagtggtagtttaacgaatgtttatcccgcagccataactcaaaagacaggtgctgga
ggagaaacacttgttgaggttggacgctctaagacatacacaccaatggctgatgatatt
ggccatgttttgaagtttgagtgtgtagtggtcaatgccgagacaaaacagaatgtgggc
ctttcttgtaccatattgacctcccgtgttattccagctccatcaccttctccgcgaagg
ctgattcctgttaatggagctgatgttatcggacagctggattctaatggaagacctttt
tctatgggatcattcactgtgctctcctacaatatattggctgatacatacgctagcagc
gacatatacagttactgtcccgcgtgggctctcgcttggacataccgtagacagaattta
ctacgggaaattgtcaagtatcgcgcagatatagtttgtctgcaagaggtacagaatgat
cattttgatgagtttttcgctcctgagctggataagcatggataccaagctcttttcaag
aggaagacaaatgaggtttacgttggtaatacaaacacaattgatggatgtgctactttt
ttcagaagagacaggttttctcatgttaaaaaatacgaggttgagttcaataaggctgcc
cagtctttgaccgaggctcttattcctgctgttacccagaagaagactgctttgaatcgt
ttggttaaggacaatgttgctttaatagttgtactggaagcaaaatttggaaaccaggct
gctgacaatcctgggaagcgccagctactttgtgtggctaacacgcatgtaaacgtttct
catgaactgaaggatgtaaagctctggcaggttcacacattattgaagggactggagaaa
atagctgctagtgcagatattccgatgcttgtgtgtggagatttcaacacagtaccagcg
agtgctcctcattcacttcttgctatggggaaggtcgatccattgcacccagatttgatg
gtcgatcctcttggaattttgcgtcctcacaccaagctaactcatcagctgccattggtt
agtgcttactcatcatttgcaagaatgggaggcagccttattgctgagcagcaaaggaga
agaatggatcctgcatcaaatgaaccattgtttaccaactgtaccagggactttataggc
acacttgattacatattttacacagctgatacgttaacagtggaatcattattggaactg
ttggatgaagagagcttgaggaaggacactgctcttccatctccagaatggtcttctgat
cacattgcacttttagctgaattccgctgcatgcccagggccagacgctga
DBGET
integrated database retrieval system
