Camelina sativa (false flax): 104713978
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Entry
104713978 CDS
T05044
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE-like
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104713978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csat03036
]
104713978
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104713978
Chromatin remodeling factors
NuRD complex
104713978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Helicase_C
DUF1087
Chromo
ResIII
HDA2-3
PHD
CHDCT2
DEAD
zf-HC5HC2H
Myb_DNA-binding
PHD_2
C1_1
PHD_4
C1_2
zf-ANAPC11
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
104713978
NCBI-ProteinID:
XP_019085130
LinkDB
All DBs
Position
9:34051367..34063232
Genome browser
AA seq
1349 aa
AA seq
DB search
MKLLKWVVNSSYGNMSSLVERLRIRSDRKPVYNLDDSDDDDFVPKKDRTLEQVEAIVRTD
AKENACQACGQSANLVSCNTCTYAFHAKCLVPPLKDASVENWRCPECVSPLNEIDKILDC
ESRPTVSSEQGSSEAAAKPVYVKQYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVN
NFHRQAESANNSEDDFVAIRPEWTTVDRILACREEAGELEYLVKYKELSYDECYWESESD
ISTFQNEIQRFKDINSRTRRGKDVDHKRNPRDFQQCDHTPEFLKGLLHPYQLEGLNFLRF
SWSKQTHVILADEMGLGKTIQSIALLASLFEENLIPHLVIAPLSTLRNWEREFATWAPQM
NVVMYFGTSQARAVIREHEFYFSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINL
DTAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMH
FLDAGKFASLEEFQEEFKDINQEEQISRLHNMLAPHLLRRVKKDVMKDMPPKKELILRVD
LSSLQKKYYKAIFTRNYQILTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEF
FKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSHKNWSYERIDGKVG
GADRQIRIDRFNAENSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAH
RLGQRNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSK
ELFASEDEEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSVDDEEENGFLKAFKVANFEYID
ENEAAALEAQRVAAESKSSAGNSDRVSYWEELLKDKFELHQAEELNALGKRKRSRKQLVS
IEEDDLAGLEDVSSGDESYEAESTDGEAAGQGVQTGRRPYRRRGRDNSEPTPLMEGEGRS
FRVMGFNQSQRAIFVQTLMRYGVGNYDWKEFVPRLKQKTYDEIKEYGVIFLKHIAEDIDE
NSPTFSDGVPKEGLRIEDVLIRIAVLMLVQDKVKFVEDHPTKPLFPSRILERFPGLRSGK
IWKEEHDKTMIRAVLKHGYGRWQAIVDDKELGIQELICKELNFPHISLSAAEQAGLQGQN
GSGNTNPGAQTNQNPGSGNTGNNNASADGAQVNSMFYYRDMQRRLVEFVKKRVLLLEKAL
NYEYAEEYYGLGGSSSIRAEEPEAEPKVADTVGVSFIEVDDEMLDGLPKTDPITSEEMMA
AAVDNNQARVEIAQHYNQMCKDFDENARESVQAYVNNQPPSSKLSESFRSLESISGNIST
ILSAPSDQSKSHESDTKPDLNNVEMKETA
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgctaaaatgggttgttaattcgagttatggaaatatgagtagtctggtggag
aggcttcgtatacgatcagacaggaaaccggtttataatctcgatgattctgatgatgac
gactttgttcctaaaaaggatcggactcttgagcaagttgaggctattgtcagaacagat
gcgaaagaaaatgcatgccaggcttgtgggcaaagtgcaaatcttgtaagctgcaataca
tgtacatatgcgttccatgctaaatgtctagttccacctcttaaagatgcttctgtggaa
aattggagatgccctgaatgcgttagccctctaaatgagattgataagatattggactgt
gaatcacgtcctacagtatctagtgaacaaggttcctccgaagcggcagcaaagcctgtt
tatgtcaaacagtatctcgtgaagtggaagggattatcataccttcactgctcttgggtg
cctgagaaggaattccagaaggcttataagtcaaatcatcgtttaaaaaccagggtgaac
aactttcaccgtcaagcggaatcagccaataacagcgaagatgattttgttgccattcgt
cctgagtggaccactgttgatcggattcttgcctgcagagaggaagctggggagctggaa
tatctcgtgaaatataaagagctatcttatgatgaatgttattgggagtcagaatcagac
atctcaacctttcagaatgaaatccaaaggttcaaggatataaattctagaactcgcaga
ggtaaagatgttgaccacaaaagaaaccctagagactttcaacaatgtgatcatactcct
gaattcctcaaaggcttgttgcatccgtaccagcttgagggacttaattttttgcggttc
tcgtggtcaaagcagacacacgtaattcttgctgatgaaatggggctaggcaaaactatt
caaagcattgcccttttagcttcactttttgaggagaacctcattccacatttggtaatt
gctccactatcaactctgcggaactgggagagagagtttgccacatgggccccacagatg
aatgtggttatgtattttggcacttcgcaagcccgagcagttatcagagaacatgagttt
tacttttcgaaagatcaaaaaaagatcaagaaaaagaaatctggacaaatcagtagcgaa
agcaagcaaaaaagaatcaagtttgatgtcctcctcacatcgtatgagatgatcaaccta
gatacagcagttctgaaaccaattaagtgggagtgcatgattgttgatgaaggccatcga
ctgaaaaataaggattcaaagctgttctcttcattaacacaatattcaagtaaccatcgt
attcttctgacaggaacaccacttcagaacaacttggatgaacttttcatgctcatgcat
tttcttgatgcggggaagtttgcaagtttggaggagttccaggaggagttcaaagatatt
aatcaagaggagcagatttcaagactgcacaacatgttggctccacatttgctcagaagg
gtaaagaaagatgtaatgaaagacatgcccccaaaaaaggagctcattttgcgtgttgat
ttgagcagcctgcagaaaaaatattacaaggctatttttacccgtaattatcaaatattg
acaaaaaagggaggtgctcaaatttcccttaataacattatgatggaattacgaaaagtt
tgctgccatccttatatgctggaaggtgttgagccagttattcacgatgctaatgaattt
ttcaaacaacttttggaatcttgtggaaagctacaacttctagataaaatgatggtcaag
ctgaaagagcaaggacacagagttcttatatacacacagtttcagcacatgctggactta
cttgaagactactgttcccataagaattggagctatgagcgaattgatggaaaggttggc
ggagctgaccgtcaaatacgcatagatcggttcaatgccgaaaactctaacaagttctgt
tttttgctctccacaagagctggtggcttaggaataaatcttgcaaccgcagatacagta
atcatttatgacagtgactggaatccccatgcggatcttcaggctatggctagagcccat
cgacttggccaaagaaataaggtgatgatttacaggctcataaaccgaggcaccattgaa
gaaaggatgatgcagttgactaaaaagaaaatggttctggagcatcttgttgtcgggaaa
ctcaaaacacaaaatattaatcaggaagaattagatgacatcatcaggtatggatcaaag
gagctttttgctagtgaagacgaagaagcaggaaagtctggaaaaattcattatgatgat
gcggctatagacaaattgcttgatcgggatctcgtggaggcggaggaggtctcagtggat
gatgaagaggagaatggattcttaaaggctttcaaggtggctaattttgagtatatagat
gaaaatgaggccgccgcattagaggcacagagagtcgctgctgaaagcaaatcttcagca
ggcaattctgatagagtaagttattgggaagagttgttaaaagataaatttgagctgcat
caggctgaggaacttaatgctcttgggaaaaggaagagaagtcgcaagcagttggtatcc
attgaagaagatgatcttgctggtttggaagatgtgagctctggagatgaaagttatgaa
gccgagtcaacagatggtgaagcagcggggcaaggagttcaaacgggacgacgaccgtac
agaagaaggggtcgagataactcggagccaactcctttgatggaaggcgaggggagatct
ttcagagtaatgggtttcaaccagagtcaaagggccatttttgtgcagacgttgatgagg
tatggagttggcaactatgattggaaggagtttgttcctcgcttaaagcagaagacctat
gatgaaataaaagagtatggagtaatcttcttgaagcacattgctgaagacatagacgaa
aattctccaaccttttcagatggcgtgcccaaggaagggcttagaatagaagatgttcta
atcagaattgctgttctgatgctagtacaggataaggtgaaatttgtagaagaccatcca
acgaaacctcttttcccctcccgcatccttgaaagattcccaggactgagaagtggaaaa
atttggaaggaggaacatgacaagacaatgatacgtgctgttttaaagcatgggtacgga
cgatggcaagctattgttgatgacaaagagttggggatccaagagcttatctgcaaagaa
ttgaacttccctcacataagtttgtctgctgctgaacaagctggcttgcaggggcagaat
ggtagtggaaacaccaatccgggagcacagactaaccagaatcctggaagcggtaatact
gggaacaataatgcttctgctgatggggcccaagtaaactcgatgttctactatcgggac
atgcagaggcgtcttgttgagtttgtgaaaaagcgagtcctacttttggagaaggcgttg
aattatgaatacgcagaggagtattatggacttggtggctcatcatctattcgtgctgaa
gagcccgaagctgaaccaaaggtcgctgacacagtgggagttagctttattgaggtcgat
gatgaaatgcttgatggacttcccaagactgatcccatcacttcagaagaaatgatggcg
gctgctgttgacaacaaccaggcgcgggttgaaatagctcaacattataaccagatgtgc
aaagattttgatgagaacgctcgtgagtcagtccaagcatatgtaaacaaccaaccacca
agtagcaagctaagtgagagcttccgttcactcgaatctatcagtggtaacataagcaca
atcctttcggctccatctgatcaatcgaagtcacatgaaagcgacaccaagccagaccta
aacaatgttgagatgaaggagacggcctaa
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