Camelina sativa (false flax): 104757118
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Entry
104757118 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
3.6.4.13
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104757118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104757118
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104757118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
nSTAND3
ABC_tran
AAA_16
SLFN-g3_helicase
AAA_30
ATPase_2
Helicase_RecD
AAA_29
DAP3
T2SSE
NB-ARC
AAA_33
FtsK_SpoIIIE
Sigma54_activat
PhoH
SRP54
nSTAND1
AAA_23
Motif
Other DBs
NCBI-GeneID:
104757118
NCBI-ProteinID:
XP_010478139
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All DBs
Position
17:complement(13814509..13819697)
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AA seq
699 aa
AA seq
DB search
MANLPILQFEEKIVEVVEKNPVVVVIGETGSGKSTQLSQILHRHGYTKSGVIAVTQPRRV
AAVSVARRVAQELDVPLGEDVGYAIRFEDRTSSKTRIKYLTDGVLLRESLSNPMLDDYSV
IILDEAHERSLNTDILLGLMKRLVRIRGSNFKVLITSATLDGEKVSEFFSGCPVLNVPGK
LYPVEILYSKERPVSYIESSLKVAIDIHAREPEGDILIFMTGQDDIEKLVSKLEEKVRSL
AEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSSGMYSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPE
IQRTSLAGSVLYLKSLDLPDIDILSFDFLDAPSSESLEDALKQLYFIDAIDANGAITSIG
RTMSELPLEPSMSRTLIEANESGCLSQALTVVAMLSAETTLLPARSKPSEKKRKHDDSNL
PDGSGYGDHIQLLQIFESWDRNNYDPVWCKENGMQMRGMVFVKDVRRQLCQIMQKISKDR
LEVGAHGRKNSRGDDYRKLRKALCVGNANQVAERMLRHNGYRTLNFSSQLVQVHPSSVLT
ADRDGMLPNYVVFHELISTTRPFMRNVCVVEMSWVAPIKRKIEKLNVRKLSGGPATSVKE
PEKKMELSKDDAETPAVIENVESRIEAARERFLARKGQK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctgccgattcttcagtttgaagagaagatcgtggaagtagtggagaagaat
ccagtcgtagttgtaatcggagaaaccggttctgggaaaagtactcagctctctcagata
cttcatcggcatggttacacaaagtccggcgtcatcgccgttactcagcctcgacgtgtg
gctgcggtttccgtggccaggcgagttgcacaggagcttgatgtacctcttggagaagat
gttggctatgctatacgtttcgaggacagaacttcaagcaaaacacggattaaatacctc
acagatggagttctacttcgtgagagcctgtcaaatccaatgcttgatgattattccgtt
atcatattggatgaggctcatgagagaagtttaaacacggatattcttttgggtctaatg
aaacggttggttagaatccgcgggtccaactttaaagttcttataacctctgcaacactt
gacggtgaaaaggtttctgaattcttttcgggctgccctgtgttgaatgttcctggaaaa
ttatatcccgtggaaatattatacagcaaagagcgccctgtcagttatattgagtcatct
ctgaaagtagcaattgatatacatgctcgtgagccagaaggtgatatcttaatctttatg
actggacaggatgatatagaaaagttagtatcaaagctagaggaaaaagtacgaagctta
gctgaaggatcatgtatggatgctatcatttatcctctacacggttctttaccacctgaa
atgcaggttcgtgtattcagtcctcctcctccaaactgccgcagattcattgttgctaca
aatattgctgaaacttctcttactgtggatggggttgtgtatgtaatcgattccgggtat
gtgaagcaaagacaatataacccatcaagtggaatgtattctcttgatgttattcaaatt
agcaaagtgcaagctaaccaacgtgcaggacgtgctgggagaacaagacctgggaaatgt
tatcgtttatacccattggcagtctaccgagatgacttccttgatgcaacaattcctgaa
atacaacgaacttctcttgctgggagtgttctatacttgaaatcgttggatcttcctgat
attgacattctcagtttcgattttcttgatgctccttcatctgagtcattagaagatgca
ttgaagcaattgtatttcattgatgcaattgatgcgaatggagcaataactagtattgga
cggacaatgtctgagcttccactagaaccatcaatgtcaagaacattgatagaagcgaat
gaaagcggttgcttatcacaagctctaacagtcgttgctatgctgtcagcagagactaca
ctacttcctgctaggagtaaacccagtgaaaagaagaggaagcatgatgattctaatctt
cctgatggatccggatatggtgatcacattcaactgctacagattttcgagtcttgggac
cgtaataattatgatcctgtatggtgcaaagaaaatggcatgcagatgcgagggatggtg
tttgtcaaagatgttagaagacagttatgtcagattatgcagaaaatatccaaagatcga
ttggaagttggtgcacatggaaggaagaattcacgcggagacgactacaggaagttgagg
aaagctctatgcgttggtaatgcaaaccaagttgcggagagaatgcttcgtcacaatgga
taccggactcttaatttctcgtcccagctagtccaggtgcatccatcatctgtgttgact
gccgacagggacggaatgttgcctaactacgtagtgttccatgagctgatttccaccaca
cggccgttcatgcggaatgtttgtgtagtagaaatgtcatgggtggctcccatcaaaaga
aagatcgagaaattaaatgtcagaaaactgagcggtggaccggctacttctgtcaaagaa
cctgagaagaagatggagttgtctaaggacgatgcagaaacacctgcagttattgagaat
gtggagagtcggattgaagcagccagagaacggtttcttgctcgtaaaggacagaaataa
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