Camelina sativa (false flax): 104771586
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Entry
104771586 CDS
T05044
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104771586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104771586
03036 Chromosome and associated proteins [BR:
csat03036
]
104771586
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104771586
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104771586
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
104771586
Noncanonical PRC1 (PRC1.1)
104771586
Noncanonical PRC1 (PRC1.3/1.5)
104771586
Noncanonical PRC1 (PRC1.6)
104771586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_4
zf-C3HC4_4
zf-rbx1
zf-RING_6
TRAF3_RING
zf-C3HC4_5
zf-Nse
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
104771586
NCBI-ProteinID:
XP_010494432
LinkDB
All DBs
Position
20:complement(24257506..24261081)
Genome browser
AA seq
525 aa
AA seq
DB search
MPVSNSFPSSEIPDEGDQQSDRFNPEAQQDLQDKKGDVNKDEEEVKRDEAEEEEEVEEVK
PNEAEEEKDKEDDDGDEDDAEKEVEEEEVEEEEEEEEDEEEEEEDEEEDSKETGPSSLPG
DQSEYMEIDLGEIRKDVQCPICLGIIRKTRTVMECLHRFCQECIDKSMRLGNNECPACRK
HCASRRSLRDDPKFDSLIAALFTNIDSYEEEELAFHEDEKARNKQIQASIAQISQRQSEA
LVKRRSLGKEAAVLMRSPRIASGSRRRRNCRNMEQQNASEAHDDDNNDDINNNGGGKDSS
SDERGTEVRQKKRRKRSTSRSTQHPSSSGANNNNGNCADNDTEVYRDSKGISPGLVWNPE
ILAWGRGGTRSNTRHGNNISGGSSKTARNARVNKLVEYLRSSIDGPNVEVDIHLKLVSMD
TNCIPDLPQPYLCCKPALLVKQLRGFVALQMNLKTEEVELLITRRGAGEDATIEKLPVVT
SASAAASKDEMQSLQDNETLSRLKVDFISSHEQHLIIAYRKKQTE
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgagtaatagcttcccgtcctctgagattcccgatgagggagaccaacaaagc
gaccgatttaacccggaagctcaacaggatctacaagacaagaagggtgatgtgaataaa
gacgaagaagaagtgaaacgcgacgaagcagaggaggaagaagaagtagaagaagtgaaa
cccaacgaagcggaggaagaaaaagataaggaagatgatgatggtgatgaagacgatgct
gagaaggaagtagaagaagaagaggtagaagaggaagaagaagaggaagaggacgaggaa
gaggaagaagaagacgaagaagaagattctaaggaaacaggtccatcttctctaccagga
gaccaatcagaatatatggaaattgatctcggagaaatccgtaaagacgtgcagtgtcca
atatgcctaggaatcataaggaagacaaggactgtgatggaatgccttcaccgcttctgc
caggaatgtattgataagtcaatgagattggggaacaacgaatgtcctgcttgcagaaaa
cattgtgcaagccggcgttctctaagagacgacccaaaatttgattctcttattgcagct
ttattcacaaatattgatagttatgaggaagaggaactggcttttcacgaagatgaaaag
gctcgtaataagcagattcaagcatctatagctcaaatatcgcaacgacagtctgaggct
cttgtgaaaagacgatctcttggtaaagaggcagcagtcttaatgagatcaccgcgtatt
gctagtggctccagaaggagaaggaactgtagaaacatggaacaacaaaatgcatcagaa
gcccatgatgatgataataatgatgatattaacaacaacggaggaggcaaagattcgtct
tcagatgagcgtggtacagaagtccgacagaagaaacgtagaaaacggtctacaagtcgt
tcaacacaacacccttcctcttcaggtgcaaacaataacaatggtaactgcgcagataat
gacactgaagtttatagagacagtaaaggaatatcacccgggcttgtttggaatccagag
atactggcttggggaagaggtggtacaaggagtaacacaaggcatgggaataatatatca
ggaggcagtagtaagactgcgaggaatgctcgcgtgaacaaacttgttgaatatctacgt
agcagcatagatggaccaaatgttgaggtggatatccatctgaagcttgtctccatggat
actaactgtataccagacttaccgcagccatatctctgttgcaagcccgcgttgcttgta
aaacagctccgtggattcgtagcacttcagatgaatttgaagactgaagaggttgaattg
ttaataacaagaagaggagcaggagaagatgcgacaatagagaaacttcctgtagtgact
tcagcttcagcagcagcatccaaagatgagatgcaaagtctccaagacaatgaaacattg
tcaaggctcaaagtcgatttcatatcaagccatgaacaacatttgatcatagcttaccgg
aagaagcaaaccgagtga
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