Clostridium scindens: HDCHBGLK_00259
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Entry
HDCHBGLK_00259 CDS
T06591
Symbol
exoA
Name
(GenBank) Exodeoxyribonuclease
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
csci
Clostridium scindens
Pathway
csci03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
csci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HDCHBGLK_00259 (exoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csci03400
]
HDCHBGLK_00259 (exoA)
Enzymes [BR:
csci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HDCHBGLK_00259 (exoA)
DNA repair and recombination proteins [BR:
csci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HDCHBGLK_00259 (exoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
QBF72914
UniProt:
B0NDX1
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All DBs
Position
complement(282797..283549)
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AA seq
250 aa
AA seq
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MKFVSWNVNGIRACVQKGFMEFFQEADADIFCIQESKMQEGQLELETPGYHQYWNYAKKK
GYSGTAIFTKQEPISVSYGIGIEEHDQEGRVITLEFEDYYFITVYTPNSQNELARLPYRM
QWEDDFLAYLKKLEEAKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTSLVDA
GFIDTFRYFYPDAQGIYSWWSYRFSARAKNAGWRIDYFCVSESLEERLVDAKILTDVMGS
DHCPIVLEMK
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgtttcatggaatgtaaatggaatccgggcctgcgtacagaaaggctttatg
gagttctttcaggaggctgatgcggatattttctgcattcaggaatcgaagatgcaggaa
ggccagctggaactggagactccgggatatcaccagtactggaactacgcgaagaagaaa
gggtattcaggaaccgccatattcacaaagcaggagcccatatccgtatcttacggaatt
ggaatcgaagaacatgaccaggaaggccgcgtgatcaccctggaatttgaagattattat
tttattacagtatatacgcctaactctcagaatgaactggcaaggcttccctatcgtatg
cagtgggaggatgacttccttgcatatctgaagaagttagaagaagcgaagccggtgatc
ttctgcggggacctgaatgtggcccacaaggagattgaccttaagaatcccaagacaaac
cgcaagaatgccggatttacagatgaagagcgggctaagttcacctcgctggtagatgcc
gggttcattgatacgttccggtatttttatccggatgcacaagggatctattcctggtgg
tcttaccgcttcagcgccagggccaagaacgcaggctggcgtatcgactatttctgtgta
tcagaatcactggaggagaggctggtggatgcgaagatcctgacggatgtaatggggtct
gaccactgtccgatcgtattggaaatgaaataa
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