Caulobacter segnis: Cseg_3113
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Entry
Cseg_3113 CDS
T01221
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cse
Caulobacter segnis
Pathway
cse03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cseg_3113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cse03400
]
Cseg_3113
Enzymes [BR:
cse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cseg_3113
DNA repair and recombination proteins [BR:
cse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cseg_3113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ADG11553
UniProt:
D5VM30
LinkDB
All DBs
Position
complement(3396725..3399376)
Genome browser
AA seq
883 aa
AA seq
DB search
MAARKLAAYEAKRDFEKTAEPSGAAAVAASERARFVIQKHAATRLHYDLRLEHEGVFLSW
AVTRGPSRDPHDRRLAVHVEDHPLAYGDFEGTIPKGQYGGGTVMLWDRGWWAPEPGFDLQ
KGLKKGEIKLVFAGERMKGGWVLVRINNDKFGDGKRENWLLIKHRDEFAMEGDLDFLEDT
AFSIASGRTMEEIAAGKGKAPTPFMTKKATASDAIWNSKGSPEATAEKAAKETGAPRRRS
AKPSAKAQAPRKVVKKAIAMPDFVPPQLCKLVDRPPGGGDWAHEIKFDGYRMQMRVEGGE
AALRTRAGLDWSGKFPQLIKDGAALPDALIDGEVVALDADGSPSFAGLQAALAEESTDDL
IFFAFDLLYAHGEDLTDLPLSERKARLKALLPEDGDRIRYVEHFESGGEAVLQSACRMSL
EGVVSKKLDAPYRSGKPGTWTKAKCRAGHEVVIGGWTTTGDAFRSLIVGVYRDGDLIHVG
RVGTGYGRDKVARLLPKLKAAERKTSPFSGKGAPRGGANIHWVDPVLVAEIEFAGFTGDG
SVRQASFKGLREDKPAQAVEAEAPAPAEDVELAEPKAAFAMKRSDGKVSVRGVAISNPDK
TLWPDAGDGTPGTKRDLAEYFEAVGDWMLEHIKGRPCSVIRMPDGVDGETFFQRHSGKGV
SALIDEIVVSGDRKPYLVFNTVESLVAAAQWGATELHPWNCRPNEQDVPGRLVFDLDPAP
DVSFDAVVEGAREIRDRLEALGLAPFCKTTGGKGLHVVTPLKPTKVDWDAAKAFAREVCA
QMAADSPDLYLLNMSKKERGGKIFLDYLRNDRMSTAVAPLSPRGRPGAPVSWPVSWTQVR
KGLDPKRFNIRTAPSLLKTLDAWDAYAESERDLEAAIRKLGKD
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgcaagctcgcggcctacgaggccaagcgcgacttcgaaaagacggccgag
ccctcgggcgcggccgccgtcgcggcgtccgagcgggcgcgcttcgtcatccagaaacac
gccgccacgcgactgcactatgacctgcggctggagcacgagggcgtgttcctgtcgtgg
gccgtgaccagggggccctctcgcgatccgcatgaccgccgcctggcggtgcatgtcgag
gaccatccgctggcctacggcgatttcgagggcacgattcccaaaggccaatacggcggc
ggcacggtgatgctgtgggaccgtggctggtgggcgccggagccaggcttcgaccttcag
aaggggctcaagaaaggcgagatcaaactggtcttcgccggcgagcggatgaagggcggc
tgggtcctggtccgcatcaataacgacaagtttggcgacgggaagcgcgagaactggctt
ctgatcaagcatcgcgacgagttcgcgatggagggcgatctcgactttctggaagacacg
gcgttctcgatcgcctcggggcggacgatggaggagatcgcggcggggaagggcaaggcg
cccactccgttcatgacgaagaaagccaccgcgtccgacgcgatctggaacagcaagggc
tcgcccgaggccaccgccgagaaggcggcgaaggagaccggcgcgcccaggcgacgaagc
gccaagccctcggccaaggcgcaggcgccaaggaaggtcgtcaagaaggcgatcgccatg
cccgacttcgtgccgccgcagctgtgcaagctggtcgaccgcccgccaggcggcggcgac
tgggcgcacgagatcaagttcgacggatacaggatgcagatgcgcgtcgagggcggcgag
gccgcactacgcacgcgcgcgggcctcgactggagcggcaagtttccgcagctcatcaag
gatggggcggcgctgccggacgccctgatcgacggtgaggtcgtggctctggacgccgac
ggatcgccctcgttcgccggcctgcaggcggccctggccgaagagagcaccgacgacctg
atcttcttcgcttttgacttgctctacgcccacggtgaggacctgaccgatctgccgctg
tcggaacgcaaggcgcggctgaaggcgctgcttccggaggacggcgaccggatccgctac
gtcgagcatttcgagagcggtggcgaagcggtgctgcagtcggcttgccgcatgtcgctg
gagggcgtcgtttccaagaagctcgacgcgccgtaccgctccggcaagccggggacctgg
accaaggctaagtgccgggccgggcatgaggtggtgatcggtggctggacaacgaccggc
gacgccttccgctcgctgatcgtcggcgtctatcgtgacggcgacctgatccacgttgga
cgggtcggcacgggctatggtcgggacaaggtcgcccgcctgctgccgaagctgaaagcg
gccgaacgcaagacctcgcccttcagtggcaagggcgcgccgcgcggcggggccaacatc
cactgggtggaccctgtcctggtcgcggagatagagttcgcgggcttcacgggagacggc
tcggtgcgccaggcgtcgttcaagggtctgcgcgaggacaagcccgcccaggcggtcgag
gccgaagcgccagcgccggccgaggacgtcgagctcgccgagcccaaggcggcgttcgcg
atgaagcgaagcgatggcaaggtttcggtgcggggcgtggcgatctccaaccccgacaag
acgctgtggccggacgccggcgatgggacgccggggaccaagcgcgacctcgccgaatat
ttcgaagccgttggcgattggatgctggagcacatcaaggggcggccttgctcggtgatc
cgcatgcccgatggcgtcgacggcgagacctttttccagcgccattccggaaagggcgtc
tcggccctgatcgacgagattgtcgtcagcggcgaccgcaagccctacctcgtcttcaac
accgttgagagcctggtggcggccgcccaatggggcgccacggaactacatccatggaac
tgccggccgaacgaacaagacgttcctggccgcctggtcttcgacctggatcccgcgccc
gatgtgtccttcgacgccgtggtcgagggcgcgcgagagatccgcgatcggcttgaggcg
ctgggcttggcgcccttctgcaagacgaccggcggcaagggcctgcacgtcgtcacaccg
ctgaagccgacgaaagtggattgggacgccgccaaggccttcgcccgagaggtctgcgcg
cagatggccgccgacagtccagacctctatctgctgaacatgtccaagaaggagcgcggc
gggaagatcttcctcgactacctgcgcaacgaccgcatgagcacggcggtggcgccgctg
tcgccgcgcggccgccccggcgcgccggtgtcctggcccgtgtcctggacccaggtgcgc
aaaggcctcgaccccaagcgtttcaacatccgcaccgcgccgagcctgctgaagactctc
gacgcctgggacgcctatgcggaaagcgagcgcgacctggaggcggcgatcaggaagctc
ggcaaggactag
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