Clostridium septicum: CP523_09720
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Entry
CP523_09720 CDS
T06069
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
csep
Clostridium septicum
Pathway
csep03030
DNA replication
csep03410
Base excision repair
csep03420
Nucleotide excision repair
csep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP523_09720
03410 Base excision repair
CP523_09720
03420 Nucleotide excision repair
CP523_09720
03430 Mismatch repair
CP523_09720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csep03032
]
CP523_09720
03400 DNA repair and recombination proteins [BR:
csep03400
]
CP523_09720
Enzymes [BR:
csep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP523_09720
DNA replication proteins [BR:
csep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP523_09720
DNA repair and recombination proteins [BR:
csep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP523_09720
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP523_09720
MMR (mismatch excision repair)
DNA ligase
CP523_09720
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP523_09720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_pol_lambd_f
HHH
5_3_exonuc
BRCT_2
Cdd1
DNA_ligase_ZBD
YhfH
PADR1_Zn_ribbon
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AYE34680
UniProt:
A0A9N7PJI1
LinkDB
All DBs
Position
2150373..2152364
Genome browser
AA seq
663 aa
AA seq
DB search
MDKKQRINELVEELNKYAYEYYSLDNPSVSDKEYDSKYDELTKLEKEIGYVLPYSPTLRI
GDRVLEGFNKYTHKGRLWSLDKAQSFEEVKEWHNRNVKFVNEMNANGEDLPPLRYVLTKK
FDGLTVNLTYDENGILVVAATRGNGEIGEEVTAQVQTIKSIPLKIDCSDVFEIHGEAIMT
AEAFEKYNKTTENPLKNLRNGAAGALRNLNVKETAKRNLSAFFYDIGYKEGAEFKNYEEM
LEFIKSKGFPMDDYIKYCNTMDEVEKEIEYIKDIRFDLNYDIDGVVIAIDDIRTRELLGY
TIKFPKWAIAFKFEAQEATTKLLDVEWNVGRSGRVGPTAILEPVELAGVTVKRATLNNLD
DIRRKGVRIGADVFVRRSNDVIPEIMGVVEESLNGTEEINVPKVCPACGGHIVQQGAHYF
CENTLSCKPQMVKSIVHFASRDAMNIEGFSEKTAEQLFEKLDIKSISELYKLEKESLIQL
EKFGPKKAQNLLDAVEKSKNCELYRFIYALGIPNVGVKTAKDLVNKFKSIEGLKNAKFEE
LVEVQDVGDIVARCVLEFFKEEKVLATINELFELGVNPLFEEKEIIESPFQGKTVVVTGT
LKNYSRTSIKEKLEGFGAKVSGSVSKKTDYVIAGEEAGSKLTKAQDLGVKVLSENEFEDM
IKG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggataagaaacaacgtataaatgaacttgtagaagagttaaataaatatgcatatgaa
tattattctttggataatccgtctgtatcagataaagaatatgattctaaatatgatgaa
ctaacaaagttagaaaaagaaataggatatgtattgccatattctcctacattaaggatt
ggagatagagttttagaagggtttaacaaatatactcacaaaggtagactctggagttta
gataaggctcaaagttttgaagaagttaaagagtggcataatagaaatgtaaaatttgtt
aatgaaatgaatgctaatggagaagatcttccaccattaagatatgttcttacaaagaaa
tttgatggattaacagtaaatcttacgtatgatgaaaatggtatattagttgtagctgcc
acaagaggaaatggtgaaataggagaagaggttacggcacaagtacaaacaataaaatca
atacctttaaaaatagattgtagtgatgtatttgaaattcatggtgaagctataatgaca
gcagaagcttttgaaaagtataataaaacaactgagaatcctcttaaaaatttaagaaat
ggtgcagcaggtgcattaagaaatttaaatgttaaagaaactgctaagagaaatctttca
gcttttttctatgatataggatataaagaaggtgctgaatttaaaaattatgaagaaatg
cttgaatttataaaatctaagggattccctatggatgattatattaagtactgcaatact
atggatgaagtagaaaaagaaatagagtatataaaagatataagatttgatttaaattat
gatattgatggagtagtaatagctatagatgacataagaactagagaattacttggatat
actattaagtttcccaaatgggcaattgcttttaaatttgaggcacaagaagctacaaca
aaacttctagatgtggaatggaatgttggaagaagtggtagagttggaccaactgcaata
ttagagcctgtcgaattagcgggagttacagttaaaagagctacactaaataacttggat
gatataagaagaaaaggtgtaagaattggtgccgatgtatttgttagaagatctaatgat
gttattccagaaataatgggagtagtagaagaaagtttaaatggaacagaagagataaat
gttccaaaagtttgtccagcttgtggagggcatatagttcagcagggagcacattatttc
tgtgagaatactttgtcatgtaagccacaaatggttaaaagtatagtacattttgcttca
agagatgccatgaatatagaaggtttttccgaaaagacagcagagcaattatttgaaaaa
ttagatataaagtcaatatcagaattatataagttagaaaaagaatctcttatacaatta
gaaaaatttggacctaagaaagcacaaaatcttttagatgcagttgaaaaaagtaagaat
tgcgaactttatagatttatatacgcactaggaataccgaatgtaggagtaaaaactgct
aaagatttagtaaataagtttaagtctatagaaggattgaaaaatgctaaatttgaagaa
ttagtagaagttcaagatgtaggagatatagttgctagatgtgttcttgagttttttaaa
gaagaaaaagtattggctacaattaatgaattatttgaattaggagttaatcctttattt
gaagaaaaagaaataatagaaagtccttttcaaggaaagacagtagttgtaacaggaaca
ttaaaaaattattcaagaacttctataaaagagaaattagaaggttttggtgctaaagtt
tcaggtagtgtgagtaaaaagacagactatgtaatagcaggagaagaggcaggatcaaaa
cttacaaaggcacaagatttaggtgttaaagttctatcagagaatgaattcgaagatatg
ataaaggggtaa
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