Cylindrospermum stagnale: Cylst_4993
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Entry
Cylst_4993 CDS
T02398
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
csg
Cylindrospermum stagnale
Pathway
csg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cylst_4993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csg03019
]
Cylst_4993
03009 Ribosome biogenesis [BR:
csg03009
]
Cylst_4993
Enzymes [BR:
csg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Cylst_4993
Messenger RNA biogenesis [BR:
csg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cylst_4993
Ribosome biogenesis [BR:
csg03009
]
Prokaryotic type
rRNA processing factors
Cylst_4993
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AFZ27044
UniProt:
K9X4K9
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All DBs
Position
5662127..5664211
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AA seq
694 aa
AA seq
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MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLKLKRTAAAITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVV
LMPYGRGVNLSRRIKSESERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIIEDLEVLQK
QWEAIQQEAHSTRAPALLNRDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSG
GQTPQGLLIDHHRDRSPILEYFRINAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKAL
KADKARPQIAQLTELGLVELTRKRQGQNIYELFGETCPTCGGLGHTVRLPGENENRMPTP
AAENSERFVSLPHREPRLPATRITESRETYDGFGEAYDGDSDSGALNLINHPSYQELGDN
KRRTRTRRSRIGINGATVKDEPTRVVTNPLAFVNEPDLDLDTEVELVTTPEIPSPSLGKP
GWTERAERTKITKAEPIKPVVEPPEIRTVEMSLQEQDVFALMGISPLVKLEREVKNPKSV
IINIVQPGQLPTTPTESTPEPTVVEKAIAEVAPVKIPAPQIEIEEKFFPQPIIEPLEFMP
LADESEANSTSTASRRRRRRSSALDADTSNGEES
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattatcatcgcggagcagcatcaaattgctgccgtcttttctgaagat
caaatacaagaactcgttgtcgccactggtcatcaccaaattggtgatatctacttagga
gtagttgaaaatgtattacctgggatagatgcggcttttgtcaatatcggcgacccagag
cgcaacggttttattcatgtaactgacctgggtccattaaagctcaagcgcaccgcagca
gcgattacagaattgttagcaccacagcaaaaagtgttggtgcaagtaatgaaagagcca
acgggaacaaaaggtccgaggctgacgggtaatattactttacctggacgctacgttgtg
ctgatgccctatggcaggggtgtaaatttgtcccggcggattaagagtgaaagcgagcgc
aaccgcttgcgggcgctagcgattttgatcaaacctgcggggatgggtttgctggtacgc
acagaagcggaaggcaagccagaggaagcgattattgaagacttagaagtgctgcaaaag
caatgggaagctattcagcaggaagcacattccacccgtgcgccagcactgctcaaccga
gacgatgactttatccagcgcgtgttgcgagatatgtacggcgcggacgtgaatcggatt
gtagtcgattccagtactggtttgaagcgggtgaagcagtatttgcagaactggagtggg
ggtcagacaccgcagggattattgattgaccatcatcgcgatcgctctccgattttagaa
tacttccggattaatgccgctattcgcgaagcccttaaacccagagtagacctaccctct
ggcggttacatcattatcgagccgactgaagcattaacggtaatcgatgtcaactctggt
tcttttacgcgatcggcaacagctagagaaaccgtgctgtggacgaactgcgaagcagcg
acagaaattgcccgccagctgcgtctgcggaatattgccggcgtcatcgtcgttgatttc
attgatatggaatcacggcgcgaccaactgcaagttctagaacactttaacaaagcactg
aaagcagacaaagcccgtcctcagattgcccaactcactgaactgggtttggtagaactg
acccgcaagcgtcaaggacaaaacatttacgaattgtttggtgaaacttgccccacctgt
ggcggtttaggacatacggtacggttacctggcgaaaacgaaaaccgaatgccaacacca
gcagcagaaaacagcgagcgctttgtatccttgccccatagagaaccacggctgccagct
actcggatcacagaatcacgggaaacctacgatggatttggggaagcttatgatggtgac
tcagactcaggtgccctaaatctgatcaatcatcccagctatcaagaactgggcgataac
aagcgtcgtacccgcacccggcggagtcgaattgggatcaatggggcaacggtaaaagat
gaacctaccagggtggttaccaatccactggcttttgtcaatgaaccagacttagaccta
gataccgaagtagaactagtaacaacaccagaaattccctcacccagccttggtaaaccc
ggttggacggaaagagcagaacgcacgaaaattaccaaggcagaaccgatcaaacctgtg
gtagaaccaccggagattaggactgtagaaatgagcctacaggaacaagatgttttcgct
ttgatgggaatttctcccttagtcaaattagagcgggaggtgaaaaatcccaagtctgta
attattaacattgttcaacctggacaacttccgaccacaccaactgaatcgactccagaa
ccaactgtcgtcgaaaaagcgatcgctgaagtcgccccagtcaagatacctgcaccacaa
attgagattgaagagaaattctttccccaaccaataattgagccattggaatttatgccg
ctcgcagatgaaagcgaagcaaatagcacctccactgccagccgtcgccgccgtcgtcgt
tcttcagcactggatgcagacacctccaacggtgaggaaagttaa
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