Clostridium saccharolyticum WM1: Closa_1417
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Entry
Closa_1417 CDS
T01288
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Closa_1417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_1417
Enzymes [BR:
csh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Closa_1417
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Closa_1417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ADL04018
UniProt:
D9R943
LinkDB
All DBs
Position
complement(1512070..1512993)
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AA seq
307 aa
AA seq
DB search
MDIFDIKKISPMLISEMMDPFDSPDYIYEIKWDGIRCVSYLGTDTDIRNKRNKLMAPLFP
ELKNLHAQVKTKCILDHELLVLKNGVPDFYEVQKRALMANSFKIKLAADRYPASIIAYDI
LYYKDKDITMLPLMERKKYLQDVVIENNMISVSRYVENEGIMLFDLVKEKGLEGVVAKRK
NSLYWQGKRSKDWIKFKVMATDDCIICGYIVKEKSMPSLILGQYDDDVLVYKGHVSLGVS
LRILNQYKYQIIDYSPFGYVPAGNENAVWLAPDLVCIVESMPTDKDSFRQPVFKGIRNDK
SAIECKV
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggatatattcgatatcaagaagataagccctatgctgatttcagaaatgatggacccg
tttgattctccagattatatctatgaaataaaatgggacggaattagatgtgtttcgtat
ttgggtacggataccgacataaggaacaaaagaaacaagctcatggctccactcttcccg
gagcttaaaaacctacatgcacaggtaaaaacaaagtgtattctggaccatgaacttctt
gtacttaaaaatggtgtgccagatttttatgaggtgcaaaaaagagctttaatggcaaat
tcctttaaaataaagctggctgcagacagatatccggccagcattatagcttatgatatt
ctatattataaagacaaggatattaccatgctaccacttatggagcgcaagaaatatctg
caagacgttgtgattgagaataacatgatatccgtatcccggtatgttgaaaatgagggg
attatgttatttgatcttgtaaaagaaaaaggtcttgaaggagtggttgctaaaaggaag
aatagtttatactggcaaggaaaacggtctaaggactggattaagtttaaagtaatggct
acagatgattgtattatctgcggatacattgtaaaagagaaaagtatgccaagccttatc
ctggggcaatatgatgatgatgtacttgtatataaagggcatgtttcgcttggtgtgagc
ttaaggatacttaatcagtacaaataccaaataatcgattattcgccgtttgggtatgtg
ccggcaggaaacgaaaatgctgtttggttggcacctgatctggtttgcatagtggaatct
atgcctacggataaggacagcttccgacagcccgttttcaaaggtatacgaaatgataaa
tcagcaatagaatgtaaggtataa
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