KEGG   Chryseobacterium shandongense: EG350_02300Help
Entry
EG350_02300       CDS       T05920                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
csha  Chryseobacterium shandongense
Pathway
csha03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EG350_02300 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csha03400]
    EG350_02300 (ligD)
Enzymes [BR:csha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EG350_02300 (ligD)
DNA repair and recombination proteins [BR:csha03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EG350_02300 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_ligase_OB_2 DNA_primase_S DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID: AZA56102
UniProt: A0A3G6MK24
LinkDB All DBs
Position
complement(475991..477871)
Genome map
AA seq 626 aa AA seqDB search
MLAKPHPEAFDDEHWVFEIKWDGYRAVADLTDEPLFYSRNGISFLSKFEKVTQDFNLQKH
KMILDGEIVAYDENGRPNFQLLQQIGDNPDLALVYQVFDILWLNGHSTEELPLIQRKELL
KEALVETDVIKYCDHIQENGISFFNQMKKMKLEGMIAKKADSEYTENHRTSDWLKIKFTN
TEEAIICGFTEPRGSRVGFGALILGKYVNGKLIYSGHTGTGFNRESILELHERLKKIVIK
KSPFETRPKTNMPVTWTQPELVCEIKYSEITKDGIFRHPVFVALREDKEPEEVKNTAGEK
EEANQNTKVMKATAHKKTRTSENEKEITLNRHKVKLTNQDKIYFPKDDITKGDVIEYYQS
VADYILPHLKNRPLSLNRFPNGIEEQSFYQKDASDNIPDWVKTTQVYSESNDKYIDYIYC
NDKATLAYLNNLGCIDMNPWNSSLPDLDHPDFLVLDLDPSKKNTFDDVIETALQVNEVLN
SIKIKGYCKTSGSTGIHVYIPMGGKYDFDQIKDFAHILMKQVHEKLPKITTLERSLQKRD
NNKIYLDYLQNRTGQTLASAYSLRPKEGASVSMPLEWNEVKAGMKPTDFNINNALERIKD
KGDLFKPVLGKGIDMMKALELLQDME
NT seq 1881 nt NT seq  +upstreamnt  +downstreamnt
atgcttgccaaaccgcatcctgaagcatttgatgacgaacattgggtttttgaaataaaa
tgggatggataccgtgcagttgcagatctcactgatgaacctttattctattcccgcaac
ggaatttcttttttatctaagtttgagaaagttactcaagattttaaccttcagaagcac
aaaatgattctggatggtgaaattgtagcgtatgatgaaaacggcagaccgaatttccag
ctgcttcagcaaattggagataacccagatcttgctcttgtgtatcaggtctttgatatt
ctttggctgaacgggcattctacagaagaacttccattgattcaaagaaaagaacttctt
aaagaagcattggtggaaactgatgtcatcaaatattgcgatcatattcaggaaaacggt
atttcctttttcaaccagatgaaaaagatgaagttggaaggcatgattgctaaaaaagca
gacagcgaatacaccgaaaatcaccggacctccgattggcttaaaataaaatttacgaac
actgaagaggctattatctgtggatttacggaaccccgcggatcaagagttggttttgga
gcattgatccttggaaaatatgttaacgggaaactgatctattccggtcacaccggaaca
ggtttcaacagagaatccatcctggaacttcatgaaagattaaagaagatcgtcataaaa
aagtcaccattcgaaaccaggcctaaaaccaacatgcctgtaacctggactcaacctgaa
ctggtatgcgaaataaaatattccgaaattaccaaagacggcattttccgccaccctgtt
tttgtggcacttcgtgaagataaagaaccagaagaagtaaaaaatacagccggagaaaaa
gaggaagccaaccaaaatacaaaagttatgaaagctacagcccataaaaaaacacgcact
tctgaaaacgaaaaagaaataacattaaacaggcacaaggtaaagcttaccaatcaggat
aaaatctattttcctaaagatgatattacgaaaggtgatgtcatagaatattatcagtct
gttgcagactatattttaccccatctgaaaaacaggccactttcccttaaccgtttcccg
aacggaattgaagaacaaagtttttaccagaaagatgccagtgacaatatcccggactgg
gtaaaaaccacgcaggtctattcggaatccaatgataaatacattgattatatttattgc
aacgacaaagcgactctcgcgtatctgaataatttaggatgtattgatatgaatccgtgg
aattcttctttacctgatctggatcatcctgactttcttgttttagatcttgatccttca
aaaaagaatacctttgatgatgtcatcgaaacagctttgcaggtaaatgaggttttaaat
tccattaaaattaaagggtattgcaaaacttcaggaagcacgggaattcacgtctatata
ccgatgggcggaaagtatgattttgaccagataaaagattttgcccatattctgatgaag
caggttcatgaaaagcttccgaaaattacaactttggaaagaagccttcagaaaagagat
aataataaaatttatctagactatcttcaaaacagaaccggacaaactttagcgagtgct
tacagtttgcgaccaaaagaaggagcgtctgtttccatgcctttggagtggaatgaagta
aaagcgggcatgaagccgaccgacttcaatattaacaacgcattggaaaggattaaagat
aagggagacttatttaaacccgttctgggtaaaggaattgatatgatgaaggcgctggaa
ttgttgcaggatatggagtaa

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