Cronobacter sakazakii ATCC 29544: CSK29544_03850
Help
Entry
CSK29544_03850 CDS
T03903
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csj
Cronobacter sakazakii ATCC 29544
Pathway
csj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSK29544_03850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csj03019
]
CSK29544_03850
Enzymes [BR:
csj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CSK29544_03850
Messenger RNA biogenesis [BR:
csj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CSK29544_03850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Rubella_Capsid
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKE96795
LinkDB
All DBs
Position
complement(3982012..3983415)
Genome browser
AA seq
467 aa
AA seq
DB search
MSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL
QRLTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPK
RQNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLI
GDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKREIPRMAIPGYEPDPSIPAEPIVNGRQGRGGGRGQGQPRRQNSEGNRSSGERSRP
AGERGRRQDGEGNRPSGERSRRPAGEGNRPAGNKPRTRRAPRKAAGE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcactgggcttaagccctgagatcctgcgcgccattgccgagcagggt
tacaacgaaccgactccgatccagcgccaggccattccggtggtgctttcaggcaaagat
ttgatggccagcgcccagaccggcaccggcaaaaccgcaggctttacgctgccgctgctg
caacgcctgacggcgaaccagccgcacccgaaaggccgtcgcccggtgcgcgcgctgatc
ctgaccccgacgcgtgaactcgcagcccaggtgggcgagaacgtgcgcgaatacagcaaa
tatctcgacatccgctcgctggtcgtgtttggcggcgtgagcatcaacccgcagatgatg
aaactgcgcggcggcgtggacgtgcttatcgcaacgccgggtcgtctgctcgatctcgaa
catcagaacgcggtgaagctcgatcaggtggaagtgctggtgctggatgaagccgaccgt
atgctggacatgggctttattcacgatatccgccgcgtgctggcgaaactgccgccgaag
cgtcagaacctgctgttctccgcgaccttctccgacgacattaaatcgctggcggaaaaa
ctgctgcataacccggaagaagtggaagtggcgcgccgcaacaccgcctctgaacaggtg
acgcagcatgtgcatttcgtggataaaaaacgcaagcgggagctgctttcttatctgatt
ggcgacggcaactggcagcaggtgctggtgtttacgcgcaccaaacacggtgctaaccat
ctggcggaacagctgaataaagacggtattaccgccgcggctatccacggtaacaagagc
cagggcgcccgtacccgcgcgctggcggatttcaaaactggcggtattcgcgtgctggtg
gcaacagacatcgctgcgcgcggtctggatatcgaagagctgccgcacgtggtgaactat
gagctgccgaacgtgccggaagattacgttcaccgtatcggccgtaccgggcgtgccgcc
gcgaccggcgaagcgctgtcgctggtgtgcgttgatgagcataagctgctgcgcgatatt
gaacgcctgctgaagcgcgagatcccgcgcatggctattccgggctacgagccggatccg
tctatcccggcggagcctatcgtgaacggtcgccagggccgcggcggcggtcgtggtcag
ggccagccgcgtcgtcagaacagcgaaggtaaccgttcatcgggcgaacgcagccgtccg
gccggtgagcgcggtcgtcgtcaggatggcgaaggcaatcgtccgtcgggtgaacgttca
cgtcgcccggcaggcgagggcaaccgcccggcaggcaacaaaccgcgcacccgtcgcgcg
ccgcgtaaagcggccggggaataa
DBGET
integrated database retrieval system
