Coccomyxa subellipsoidea: COCSUDRAFT_57105
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Entry
COCSUDRAFT_57105 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl04120
Ubiquitin mediated proteolysis
csl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
COCSUDRAFT_57105
04120 Ubiquitin mediated proteolysis
COCSUDRAFT_57105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csl04121
]
COCSUDRAFT_57105
Enzymes [BR:
csl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
COCSUDRAFT_57105
Ubiquitin system [BR:
csl04121
]
Ubiquitin ligases (E3)
U-box type E3
COCSUDRAFT_57105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
HMG_box
Motif
Other DBs
NCBI-GeneID:
17039175
NCBI-ProteinID:
XP_005645737
JGI:
57105
UniProt:
I0YS24
LinkDB
All DBs
AA seq
964 aa
AA seq
DB search
MALQELAEEGGLPQVQLRLDRDNLERVLMARLMEEPAEAQWPLHYLLACYGRASDEFRAS
ASIKDAAAVQRVQESLLYSKQLVVSYSGLLLTMDMFPQPAVAQQRGALQLLDSLDRREGA
GPPTATPMPAGFLEDFAQRFEQEGLETIIEPIATEVSRRLVGMSPLGDYGAPLAMLQGLT
AIRPIARAYQKLPRWRPAVANGRQLQTESLLGPPFSLGVMPDVLSQPQPSVHQQCYAGLS
KQNPMEVNRIHHMLRAIMKTIHDTLYAISMNFLKSQDTREGMLSWFALALECNAERAKLQ
TNPRLAANHSFFVSLVTVLLRLCDPFLEPLSGKAWGKIDAGYVMRSKRIDYKDDTKLAVD
AEEQRAVQERLSSGDAASTPSYHFICECFFLTAKGLHLGLIKMIQDLYNLARTQQGLERD
LRHMDSMVQGMLEQNNPMVDHYQRQITMVKARIEQMGDMYIGYTAAISSDDLLKNSVLFY
RLVAAWMLRMASPATATTGQPELPLPSPAPLEFRMLPEYFVEDMVELLLYVSRFKPMVLE
GLPMEELLLFFVTFMGSPDFIHNPYLRSRMVEVLTTWMPQEEDGGASWKSRRSTQVAASV
LLLIDSHPLVLSNMVRSVLRLYVDIEHTSRNNAFYEKYNLRYSMGELLLHLWNIPAHREA
WRRVAQQEGGYGQLYQHFAHFLETDAIYLLNDAMEILPKVKETEIMMEDEERWKALPEEE
RQEQEQTLNQNTNQLRSDLLMAGRNLSIIRSSTTEVTAPWLLREMAPRIASTLNYFLLHL
AGSGRRKLKIKDPQRYSWQPKEVLAQIAAIYVHLSRADDNAVFAREIANDERSYNSSMFA
EASQVLRQFMLLSEGEIRELESLAARVVSAEAEKVAEEELLQDPPEEFVDALMDTLMEDP
VTLPTSKQVIDRSTISRHLLSDSHDPFNRMPLKEEDLIPNTELKARIQAWKAEMHEQARR
KMQS
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcaggagcttgcagaagagggggggcttccacaggtgcagctgcgcttggac
agggataaccttgagagggtcctcatggcacgattaatggaggaaccagccgaggcgcag
tggccgctgcactacctgctggcctgctatggcagagcctctgatgagttccgggcttct
gccagcatcaaggatgcagccgctgtgcagcgagtgcaggaatcgctgctgtacagcaag
cagctcgttgtctcctactctggcctgctcctcaccatggacatgttcccacagccagca
gtggcgcagcagaggggggcgctgcagcttctggacagcctggacaggagggagggtgct
gggccgcccacagccacgcccatgccagcgggcttcctggaagactttgcccagcgcttt
gagcaggaagggctggaaacaatcattgagcccattgcgacggaggtgtcgaggaggctg
gttgggatgtctcctttgggggactatggagcgcccctcgcaatgcttcagggcctcaca
gcgatcaggcccatcgcgcgcgcataccagaagctgccacggtggcggccagctgtcgca
aatgggcgccagctgcagacggagagcttgctggggccgccgttctctctgggggtgatg
ccggacgtgctgtcccagccgcagccgagcgtgcaccagcagtgctacgcggggctgtcc
aagcagaaccccatggaggtcaacaggatccaccacatgctgcgcgccatcatgaagacc
atccacgacaccctctacgccatctccatgaactttctcaagagccaggatacaagggag
ggcatgttgagctggtttgcgctggcgctggagtgtaatgcggagcgcgccaagctgcag
acaaatccgcgcctggccgcaaaccactccttcttcgtcagcctggtcacggtgctcctg
cgcctgtgcgaccccttcctagagcccctctccggcaaagcctggggcaagatagacgcc
gggtacgtgatgcgcagcaagcggatagactacaaggacgacaccaagctggcagtggat
gcagaggagcagagggcggtgcaggaacgcctcagctcaggcgacgcagccagcactccc
tcctaccacttcatctgcgagtgcttcttcctcaccgccaagggcctccacctgggcctc
atcaagatgatccaagacctctacaacctggcccggacgcagcaggggttggagcgggac
ctgcggcacatggattcgatggtgcagggcatgctggagcagaacaaccccatggtggac
cactaccagcgccagatcaccatggtcaaggcgcgcatcgagcagatgggcgacatgtac
atcggctacaccgccgccatctccagtgacgacttgctgaagaactcggtgctgttctat
cggctggtggctgcctggatgctgcgcatggcgtcccccgccaccgccaccactggccag
cccgaactgccgctgccctccccagcacccctggagttccgcatgctcccggagtacttt
gtggaggacatggttgagctgctgctgtatgtgagccgcttcaagcccatggtgctggag
gggctgcccatggaggagctgcttctcttctttgtcaccttcatgggctccccagacttt
atccacaacccctacctgcgctcccgcatggtcgaggtgctgacgacgtggatgccgcaa
gaggaggatggcggcgcgtcgtggaagagccggcgcagcacgcaggtggccgcctccgtg
ctcctgctcatcgacagccacccgctcgtcctcagcaacatggtcaggagtgtgctgcgg
ctgtatgtggacatcgagcacacctcgcgcaacaacgccttctacgaaaagtacaacctg
cgatacagcatgggagagctccttttgcacctgtggaacatccctgcgcatagggaggcg
tggaggagggtggcccagcaggagggcggctacgggcagctctaccagcactttgcacat
ttcctggagaccgacgccatctacctcctcaacgacgccatggaaatcctgcccaaagtg
aaggagacggagataatgatggaggatgaggagaggtggaaggcgctgcccgaggaggag
cgccaggagcaggaacagaccctcaaccagaacacaaaccagctgcgcagcgatctgctg
atggcggggcgcaacttgagcatcatccgcagctccacgaccgaggtcaccgcgccctgg
ttgctgcgcgagatggctccccgcattgcctccaccctcaactacttcttacttcacttg
gcagggtcggggcggcggaagctgaaaatcaaggacccgcagcgctacagctggcagccc
aaagaggtgctcgcgcagatcgcggccatctacgtgcacctctcgcgcgccgatgacaac
gctgtcttcgcgcgcgagatcgccaacgacgagcgctcctacaactccagcatgttcgcc
gaggcctcacaggtgctgcggcagttcatgctgctgtcggagggggaaatacgcgagctg
gagtccctggcggcacgcgtggtttcggctgaggccgagaaggtggccgaggaggaactg
ttgcaggatccgccggaggagtttgtggatgcactgatggacacgctgatggaagatccg
gtcaccctgcccaccagcaaacaggtcatcgaccgctccaccatctccaggcacctgctg
tcggactcgcatgaccccttcaacaggatgcccctgaaagaggaggacctcatacccaac
acagagctcaaagcgaggatccaggcgtggaaggccgagatgcacgagcaggctcgcaga
aaaatgcaatcctga
DBGET
integrated database retrieval system