Coccomyxa subellipsoidea: COCSUDRAFT_60646
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Entry
COCSUDRAFT_60646 CDS
T02914
Name
(RefSeq) hypothetical protein
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
csl
Coccomyxa subellipsoidea
Pathway
csl03410
Base excision repair
csl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
COCSUDRAFT_60646
03450 Non-homologous end-joining
COCSUDRAFT_60646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csl03400
]
COCSUDRAFT_60646
Enzymes [BR:
csl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
COCSUDRAFT_60646
DNA repair and recombination proteins [BR:
csl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
COCSUDRAFT_60646
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
COCSUDRAFT_60646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_lambd_f
DNA_pol_B_palm
DNA_pol_B_thumb
NIP_1
Motif
Other DBs
NCBI-GeneID:
17035968
NCBI-ProteinID:
XP_005642564
JGI:
60646
UniProt:
I0YI01
LinkDB
All DBs
AA seq
702 aa
AA seq
DB search
MQVSYDGGKLLRLPKEVHFVTPEFVSECLAHGQLQPEREFLIDIVRMAVLATGQQAARNS
DSRHGGDLREPSRVHAEHHGGGEMSQDVWEQWQRAGFVPAPAATLNSKHGSKTRDAAPTS
YPTSKDVDVTERDQGASDVSKPSLNSKVIAESPGGLVPHMDTSSTVTERGSCGVWDVAYD
KSAAEETVRKLGLHWHRQEVESVKHAAADGSGDRSSGPGTTVNGGIPGHNGSQELASFAL
NNSCAHTACSAKAIQRAIKAVVESTSALVTADDCEKLGIGEKSIEKLQEIFMEVWGTGEA
TAERWYRDGCRSLEDVQGRSDLSMQQRTGMKYFEDFKQRIPRSEVAAMGATVCDAAEEVL
DCSNLPDGDLLFCSVLGSYTRGKPLTGDVDMLIAPPPSCGEIDSRQALHAICKCLQKRGL
LLDDMASTAPAARGDGAATFMGVARHATSPCARRVDIKFYPRRVLPFAIMHFTGSGAFSR
ALRYWARSRANEARRFQPSANGFKLSDYALVPIQSKEPTRQASNYHNAENVAEARKFKDF
WRANLGHAAAAVTSFVNVNVINVSGMAECLRLLESLRGSEHPYEDMAHLISEQLRADVYV
ARVEVERLFTAERYRLHAATRREPFAPQQLQQRQHSQEQRTAGAQRSTREQKNYRPQDYP
PPDYRPQDYPPPDYRPLDYRPLSVAGDHTLRIQLDPADRARP
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtatcatatgacggcggcaagcttttgaggctgccaaaggaggttcattttgtc
acgccagaatttgtgagcgaatgcctcgcgcatggtcaactgcagcccgagagggagttt
ttgatagacatagtgcgcatggctgttctggccactggacaacaggctgcgcgcaacagc
gacagcaggcatggaggggatctgagggagcccagccgggtacatgcggaacatcatggc
ggtggcgaaatgtcgcaggatgtgtgggagcagtggcagagggctgggtttgtgcctgca
cctgcagcgaccctgaatagcaagcatggcagcaagacacgtgatgctgccccgaccagt
tatcctacaagcaaagatgtggatgtcacagagagagatcagggggcatctgacgtcagc
aagccctccttgaacagcaaggtcatcgcagagtctcctggtggactggtgccccatatg
gacacttcctccacagtcacagagcggggatcatgtggagtgtgggatgtggcctatgac
aagagtgcagcagaggagactgtcaggaagctgggcctgcactggcaccgacaggaggtg
gaaagtgtcaagcatgctgcagctgacggcagtggggaccgctcttcaggacctgggact
actgtgaacggtgggattccagggcataatggaagccaggaattggcatcctttgcgctg
aacaattcctgtgcccacacggcatgctcggcaaaggccattcagcgcgcaatcaaggca
gtggtggagtcgaccagtgctctggtgacagcagatgactgtgagaagctaggcatcgga
gagaagtccatcgagaaactgcaggaaattttcatggaggtgtggggcactggtgaagcc
actgcagagcgctggtaccgggatggctgccgctcactggaggatgtgcaaggccgctct
gacttgagcatgcagcagaggacgggcatgaagtactttgaggacttcaagcagcgcatc
cctcggtccgaggttgctgccatgggcgccaccgtgtgcgatgcggctgaggaagtgctt
gactgttccaatttgccagatggcgacctgctgttctgcagcgttttgggaagctacacg
cgaggcaagccgttgacaggcgatgtggacatgctcattgcacctcctcctagctgcggc
gagattgacagcaggcaggcactgcatgccatctgcaagtgtctccagaagcggggcctc
ctcctggacgacatggcaagcactgcccctgctgccaggggggatggtgccgctaccttc
atgggtgtggctcgccacgcaacatccccctgcgcccggcgcgtggacatcaaattctat
ccccgcagggtcctgccctttgccattatgcacttcacaggcagcggcgccttctcaaga
gcgctgcgatactgggcacggtcgcgcgccaatgaggcacgaaggtttcagccgagtgcg
aatggcttcaagctaagcgactacgcattagtgcccatccaaagcaaggagcctacccgg
caggcgtccaattaccacaatgctgaaaatgtggcggaggcaagaaagttcaaggatttc
tggagggcgaacctggggcacgcagcagcggccgtgacatctttcgtgaacgtgaacgtc
atcaacgtgtccgggatggcagagtgtctgcggcttttggagagcctgcgtggcagcgag
cacccgtacgaagacatggcgcacctgatcagcgagcagctgcgcgccgatgtgtacgtg
gcgcgcgtggaggttgagcggctgttcacagccgagcgctaccggctgcacgcagccact
aggagggagcctttcgcccctcagcagctgcagcagaggcagcacagtcaggagcagcgc
acagcaggagctcagcggagcacaagggagcagaagaactaccggccgcaagactacccg
ccgccagactaccgcccgcaagactacccgccgccagactaccggccgctagactaccgg
ccgctctccgtagcaggggatcataccctacggatccagctagaccctgcggatcgcgct
agaccctag
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integrated database retrieval system