Capnocytophaga stomatis: CGC58_02500
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Entry
CGC58_02500 CDS
T05529
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csto
Capnocytophaga stomatis
Pathway
csto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC58_02500 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csto03019
]
CGC58_02500 (recQ)
03400 DNA repair and recombination proteins [BR:
csto03400
]
CGC58_02500 (recQ)
Enzymes [BR:
csto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGC58_02500 (recQ)
Messenger RNA biogenesis [BR:
csto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC58_02500 (recQ)
DNA repair and recombination proteins [BR:
csto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CGC58_02500 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HTH_45
HHH
Motif
Other DBs
NCBI-ProteinID:
ATA88703
UniProt:
A0A250FUD7
LinkDB
All DBs
Position
complement(557826..560015)
Genome browser
AA seq
729 aa
AA seq
DB search
METAKNDLQSALKHYFGFDSFKGHQQEIIQSVISGKDTFVIMPTGGGKSLCYQLPALVLE
GTAIVISPLIALMKNQVDAMRGISSTDSVAHVLNSSLTKSEIREVMDDISNKKTKLLYVA
PESLIKDEYANFLKTIPISFVAVDEAHCISEWGHDFRPEYRNIRTIIDRLGEDIPIVALT
ATATPKVQEDILKNLGMSDANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQNSKKSGI
IYCLSRKKVEELAQTLQVNGITAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMVGKPIAEQ
EIGQALLQDIVAYAETSSSRRKFILHYFGEEFDEVNGEGADMDDNVRHPKVKKEAKDDVV
KLLNVIISTKQKFKAKEIVNTLVGKVTALIKSHKIDEQPFFGIGKDKDDLYWMALLRQVM
VSGLIRKDIETYGVMFITDKGRNFLENVTSFMMTEDHVYEEDTEDVNTAGGGVADEVLLG
MLKDLRKRVAKKKGVPPFVVFQDPSLEDMALKYPITISELTNVHGVGEGKAKKYGSEFIE
LIGKYVEENDILRAEDLIVKTTGSNSSLKLYIIQNIDRKLPLPDIAKAKGLEMDEFLKEL
EQIVYSGTRLDISYYIDEIFDEEQQEELHDYFMEAETDKISVASKEFDGDYEDDELRMYR
VKFISEVAN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggctaaaaatgatttacaaagtgctttgaagcattacttcggttttgacagc
ttcaaagggcatcagcaggaaattatacaaagtgttatcagcggaaaggatacgtttgtt
attatgccaacaggaggaggaaaatcgttatgttatcagcttcctgcattggttttggaa
ggtacggctattgttatatctccgttaattgcgctgatgaaaaatcaagtagatgcaatg
cgcgggatttcatcaacggatagcgttgcacacgttttaaattcatcactcaccaaaagc
gaaattcgtgaggtgatggacgatatcagtaataagaaaacaaaactattatatgtagca
cccgaatctttaataaaagatgagtatgctaactttttgaaaacaattcctatatcgttt
gtagctgtggatgaggcacattgtatctcggaatgggggcacgattttcgtccggagtac
cgcaatatacgaactattatagaccgattaggggaggatattcccatagtggcgttgacc
gctacggcaacaccaaaggtccaggaagatattttgaagaacttaggaatgtccgatgcc
aatgttttcaaatcttcatttaaccgtcctaatttatattatgaggtgcgtccgaaaacg
aaaaatgtagatgcagatattatccgctttgtaaaacaaaatagcaagaaatcaggaatt
atttattgcttaagccgaaaaaaagtagaagagcttgctcaaactctgcaagttaatgga
ataacagcagttccttatcacgcaggattagacgctaaaactcgggctaaacatcaggat
atgttcctaatggaagaagttgatgtggttgttgctactattgcctttggtatgggaatt
gacaagcccgatgtgcgttttgtaattcaccacgacattccaaaaagtattgaaagttat
tatcaagaaaccgggcgtgccgggcgtgacggcggtgaagggcattgtttggctttctat
tcttacaaagatgttgaaaaattagagaagtttatggtaggcaaacccattgccgaacaa
gaaatcggtcaggctttgttgcaagatatcgttgcctatgcagaaacttcaagctctcgt
cgtaaatttattttgcattatttcggagaagaatttgatgaagtaaacggagaaggagct
gatatggatgacaacgtacgacatccgaaagttaagaaagaagctaaagatgatgttgtt
aagttattgaatgtcataatatccactaaacagaagttcaaagcgaaagaaattgtaaat
accttggtagggaaggtgacagccttgataaaatcacataaaattgacgagcaacctttt
tttggtatcggtaaagacaaagatgatttgtattggatggcgttacttcgtcaggttatg
gttagtgggctgattcgtaaggatatagaaacttacggggtgatgtttataacagataaa
ggacgaaattttcttgaaaacgttacatcttttatgatgactgaagaccacgtttacgag
gaagacaccgaagatgtgaataccgctggtggaggcgttgccgacgaagttcttttggga
atgttaaaggatttacgcaaaagagttgcgaagaaaaaaggagttccgccatttgttgtt
tttcaagacccttcgttggaggatatggctctgaaatatccgattacaatatcagaactt
actaatgttcacggagttggagaaggaaaagccaaaaaatatggaagcgaatttattgaa
ttaatcggcaaatatgtagaggagaatgatatcctgcgtgccgaagatttaatagtgaaa
accactgggtctaattcttctttgaaattgtatattattcagaatatagacagaaaattg
cctttgccggatattgccaaagcaaaaggtctggaaatggatgagtttttgaaggaattg
gaacaaattgtttacagtggcacaagactggatatcagctactatattgatgaaattttt
gacgaggagcaacaagaagaacttcacgattattttatggaagccgaaacggataaaatt
tcggtagcctctaaggagtttgatggagattacgaagatgacgagcttcgtatgtatcgt
gttaaatttattagtgaagtggctaattaa
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