KEGG   Candidatus Caldiarchaeum subterraneum: CSUB_C0907Help
Entry
CSUB_C0907        CDS       T02904                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
csu  Candidatus Caldiarchaeum subterraneum
Pathway
csu03030  DNA replication
csu03410  Base excision repair
csu03420  Nucleotide excision repair
csu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CSUB_C0907
   03410 Base excision repair
    CSUB_C0907
   03420 Nucleotide excision repair
    CSUB_C0907
   03430 Mismatch repair
    CSUB_C0907
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csu03032]
    CSUB_C0907
   03400 DNA repair and recombination proteins [BR:csu03400]
    CSUB_C0907
Enzymes [BR:csu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CSUB_C0907
    6.5.1.6  DNA ligase (ATP or NAD+)
     CSUB_C0907
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CSUB_C0907
DNA replication proteins [BR:csu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CSUB_C0907
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CSUB_C0907
DNA repair and recombination proteins [BR:csu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CSUB_C0907
   NER (nucleotide excision repair)
    Other NER factors
     CSUB_C0907
   MMR (mismatch excision repair)
    Other MMR factors
     CSUB_C0907
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PucR
Motif
Other DBs
NCBI-ProteinID: BAJ50764
UniProt: E6N6N5
LinkDB All DBs
Position
868315..870069
Genome map
AA seq 584 aa AA seqDB search
MLFRELADFYERLEATTKRLEMTDILAELLSKTPPDIIDKVVYMTLGEIYPAYRGLELGV
AEKLALRVVKQVTGAHEKEVDEAYARHGDVGNAAMVLLRKKPQTTLFAQELTVQDVYTAF
EKIARSTGPGAVDVKMSILAGLLAQASPVEAKHILRMVTGNMRLGVADMTILDALAKAFG
GEREVYERAYNLSSDIGLVALTAAREGPEGVRRFRVRVGIPVRCMLAERLASAEEILEKV
GGRGFAEYKYDGERMQIHKSGQTVVIFSRRQENITSQYPDVVEMVTRGVSAKEAILECEA
VPLDPETGETLPFQELMHRKRKKEIEKAAEEYPVALYFFDILYVDGEDLTTQPLPIRRKR
LEEIVVESERMKLSTGRMVETPEEVEKFFAEAVEAGCEGLMIKSVDEESVYRAGARGWQW
IKLKRDYRSEMIDTVDLVVVGAFHGRGRRKGRYGALLMAVYNPEKDVFQTVCKVGSGFKD
VDLETLTERVNRLRLDAKHPRVEALMEPDIWVQPSLVLEIIGAEVTLSPVHTCAWDVVKQ
GYGLGIRFPRFTGRVRDDKKPEDATTDSEIVEMYRSQLKKIEAE
NT seq 1755 nt NT seq  +upstreamnt  +downstreamnt
atgcttttccgcgaactcgctgacttttacgagcggcttgaggctacgacgaagaggctt
gagatgacggatattttggcggagcttttgtccaagacgccgccagacatcattgacaag
gttgtttacatgactttgggggagatttacccggcctatcgtgggctggagctgggtgtc
gcggagaagcttgcgctgagggtggtaaagcaggttactggggctcatgagaaagaggta
gatgaagcatatgcgagacacggtgacgtgggaaacgccgccatggtgctgctgcggaag
aagccgcagacaacgcttttcgcacaggagctgacggttcaagatgtctacacggctttc
gagaagattgcgcgttcaacggggcccggggcggtggatgttaaaatgtctatcttggct
gggttgttggcgcaggcgtcgccggtggaggccaagcacattctccgtatggtcacgggc
aacatgaggctgggtgtcgcggacatgactattctcgacgccttggccaaggcgtttggc
ggcgagcgggaggtctatgagagagcatacaatctgagcagcgacatcggcctcgttgcc
ttgacggcggccagagaggggcccgagggggttcggagattcagagtaagggttggcata
cctgttagatgcatgctggcggagaggcttgccagcgctgaggagattctcgagaaagtt
ggtggacgcgggttcgcagaatacaagtatgacggtgaaaggatgcagatacacaagtct
ggtcaaactgttgtcatcttctcacgtcggcaggagaacatcaccagccagtatcccgat
gtcgtcgagatggtgacgagaggtgtttcggcgaaagaggccatactcgagtgcgaagct
gttccgcttgaccccgagacaggtgaaacacttcccttccaagaactcatgcatcggaag
aggaagaaggagatagagaaggccgccgaagaatatccagtggccttgtatttctttgac
atcctctacgtcgacggcgaagacctcaccactcagcctctgcctatccgcaggaaaagg
cttgaggagattgttgtggagagcgagcgcatgaagctaagcacgggcaggatggttgag
acacctgaggaggttgagaagtttttcgccgaagctgttgaggctggctgcgaagggttg
atgataaaatcggttgatgaggagagtgtttacagggctggggcccgtggatggcagtgg
attaagctgaagcgtgattatcggagcgagatgattgacaccgtcgacctcgtcgtggtc
ggcgccttccacggacgcgggagacgaaagggccgctacggcgcactgctaatggctgtc
tataatccggagaaggatgtattccagacggtttgtaaagttggctcagggttcaaggac
gtggacctcgaaacattgacagagagggttaacaggctacggctcgacgccaagcatcca
cgggtagaggccctaatggagccggacatctgggttcagccgagtctcgtcctcgagata
ataggggccgaagtaacgctcagccccgtgcatacatgtgcttgggatgtggtcaagcag
ggctatgggctggggattaggtttccacggttcacgggcagggtgcgagacgacaagaag
cccgaggacgcgacaacagacagcgaaatagtcgagatgtaccggagccagctgaagaag
attgaggcagagtga

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