Cucumis sativus (cucumber): 116401623
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Entry
116401623 CDS
T02486
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
3.6.4.13
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116401623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
116401623
03009 Ribosome biogenesis [BR:
csv03009
]
116401623
Spliceosome [BR:
csv03041
]
Complex A
U1 snRNP components
U1 related factors
116401623
Complex B
116401623
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
Pre-60S particles
Helicases
116401623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
116401623
NCBI-ProteinID:
XP_011651019
LinkDB
All DBs
Position
3:10535200..10541750
Genome browser
AA seq
1164 aa
AA seq
DB search
METGDSAPPSLGPRYAPDDPTLPKPWKGLIDGSSGLLYYWNPETNVTQYEKPVSLPPPLP
HGPHPGVSTSKPTSILEPHSMVSNGTLAPHVQQNHHVLQQDGQVNNQLSQQPGHLISQQH
NSVTGQVAVNHHPGMQMAPDGRQHSSQSNQVMQQQGVFAMSSQHIGHQQVHQGQKMVHAN
QQMSQHPNIQPPQNPGQALQNPGQQMPQPSVQHLGHPNIQNPTPLVGQPQGPQYCQQQAQ
YISYQQNIPSNVQQNSQQQVQQSPLGMPFGNHLEQKPAFLKREENIQSGNQVGYSSSQLQ
QSGGTSSIHNLHSGTNSSQMQQFGLASDQARQFGSSPRNMQQQHPVVQLQNAGVESTHRH
HHSRFQDQMGPAVMQGQQAGAENLPGRVGNEYYFGRNEGPGIGPHQPRLAAIPMARSQQD
TRMSAVPFPTAAPGHPSGTNFSAVPTHNLYSHGSGGPTLSNNLMGPTHIGASDVTNMSPV
EVYRQQHEVTASGDNVPAPFMTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRD
IVAIAKTGSGKTLGYLLPAFILLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSS
RVCCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKMINFRQISLLVLDEADRML
DMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDVLAANKAI
TQYVEVIPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNLGRGFGAAAIHGDKS
QGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAG
ATGVAYTFFCDQDWKFAADLIKVLEGAEQPVPPELQNMAMRGGPGFGKDRGGMGRHDAVM
GGSRWDSGGRGGMSDGGFGGRGGARDGGFGGRGGMRDGGFGGRGGMRDGPGGRGGRGDFF
SIRGRGRGFGGPPGGHVGWGRGDRGGPHNRFNGVDGRGRGRGQGRFDNRRDLSNRSRGRS
YSRSPERVRTWGYSPSRSRSGSRSRSSRSWSRSRSRSRSRSRSRSRSRSRSRSRSRRSRS
RSRSKDTNERPRVRNFDKKDNPPLESVGTASPDTQKNCFEEQEDAGQLAPMPGSNDMEAM
NPENGDTSDQIVNAAAPSNINESE
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaaactggggactctgctcccccttccctcggtcctcgctatgcaccggatgaccct
actcttccgaaaccttggaagggattgattgatgggagcagtggactattatactactgg
aaccctgaaaccaacgttactcagtatgagaagccggtctctttgccaccaccattacca
catggtcctcatcctggggtctctacttccaagcctacttcaatcctagagcctcattca
atggtgtcaaatggcacactggcacctcatgtacagcaaaatcatcatgtccttcaacaa
gatggtcaagtaaacaaccagctttctcaacaacctggacatctgatctcacaacagcac
aattctgttactggtcaggtagctgttaatcaccatcctggcatgcaaatggcaccagac
gggcgacaacatagctcgcaatcgaaccaggtcatgcagcaacagggtgtgtttgcaatg
tcatcacaacatatcggccaccagcaggtgcatcaaggtcagaaaatggtacatgcaaat
caacaaatgtctcaacatcctaacattcaacccccacaaaatccaggacaagccctgcag
aatccgggacaacaaatgccacagccatcagttcagcatttaggacatccaaacatacaa
aatccaaccccattagttgggcagcctcaaggtccacaatattgtcagcagcaggctcag
tatatcagttaccagcaaaacataccttcaaatgtgcagcaaaattcacagcagcaagtt
caacaaagccctttaggtatgccatttggtaatcacctcgagcagaagccagcttttctg
aagagagaggagaatatccagtcaggaaaccaagttggatattcttcttcccagcttcaa
caaagtggtggcacctcatccattcataacctacattctggaaccaattcttcacaaatg
caacaatttggtttagcatcagatcaagcacgacaatttggtagctctccgcgaaatatg
caacagcaacatcctgtggttcaattgcagaatgcaggtgttgaatcgactcatcgccat
catcattctagattccaagatcaaatgggcccagctgtgatgcaggggcagcaagctggt
gctgaaaatttgccaggcagagtcggaaatgaatattactttggcagaaatgaggggccg
gggattggtccacatcagccaaggcttgcagcaataccaatggcaagaagccagcaggac
acaaggatgagtgctgtcccatttccaactgcggcacctggtcatcctagtgggacaaat
ttttctgctgttcccacacataatttgtacagccatggatctggtggtccgacactgtca
aataatctgatgggccctactcatattggagcttcagatgttactaatatgtcacctgtt
gaagtttatcgtcaacagcatgaagtaactgcatcgggtgataatgttccagctccattc
atgacattcgaggctactggcttccctccggagatactgagagagatatattctgctggt
ttctcatctcctacgccaattcaagcacaaacatggcccattgccctgcaaggtcgggac
atagtcgccattgctaaaacagggtctgggaaaactctgggctatttgcttcctgccttc
attcttctgaggcagtgccgaaataaccctcaaaatggaccgactgtgttggttctggct
cctactagggagcttgctactcaaatacaagatgaagccattaaatttgggagatcttct
cgggtttgttgtacgtgcttgtatggtggagcccctaaaggtcctcaattaaaagagtta
gatcgtggtgctgatattgtggtggctactcctggacggcttaatgatatacttgaaatg
aagatgatcaactttaggcaaatttcactgcttgtgcttgatgaagctgatcggatgctg
gatatgggatttgaaccccaaattaggaaaattgtgaatgaaataccaccacgtagacaa
actctcatgtatacagcaacctggcccaaggaagtaagaaaaatagcaaatgatcttctc
gtgaattctgtccaggtgaatattggtagcgttgatgtacttgctgctaacaaggctatc
acacagtatgttgaagtcattccacagatggaaaagcagagacggttggagcagatcctt
cgatcccaagaacgggggtccaaggtaataattttttgttccacgaagaggttgtgtgat
cagcttgcacggaatcttgggcgtggttttggggctgctgcaattcatggggacaaatca
cagggagagcgtgattgggtattgaaccagtttcgcagtgggaagtcgccgatactagtt
gctactgatgttgctgctcgtgggcttgacatcaaagatataagagtggtgatcaactat
gattttccaactggaattgaggactatgttcaccgaattggaagaactgggagggctgga
gcaaccggagtagcatataccttcttctgtgatcaggattggaaatttgctgctgatttg
ataaaagttcttgagggggctgagcagcctgtgcctcccgagttgcaaaatatggctatg
cgtggtgggccaggtttcggaaaggataggggtgggatggggcgtcatgatgctgttatg
ggtggcagtcgctgggattcaggagggcgaggtggcatgagcgatggcgggtttggtggt
cgcggtggtgcaagagatggagggtttggtggccgtggtgggatgagagatggcgggttt
ggtggtcgaggtgggatgagagatggtcctggtggacgaggtgggagaggtgatttcttt
tccattcggggtagaggacggggttttggtggtcctcctggtggtcatgttggttggggc
agaggtgatcgtggtggcccacacaataggttcaatggtgtagatggacgtggtcgtgga
cgtggacagggtcggtttgataacagaagagacctcagtaatagaagtagaggcagaagt
tacagtcgtagtcctgaaagagtccgaacgtggggttacagcccaagtcgaagtcgcagt
ggtagccgtagtcgcagtagtagaagttggagtcggagtcggagtcggagtcggagtcga
agtcgtagtcgtagcaggagtagaagcaggagccgtagtcggtctcgccgaagccgtagt
cgtagccgtagcaaggatactaacgagcgaccacgtgtccgaaacttcgataaaaaagac
aacccaccacttgaatcagtaggtacagcgtctcctgacacacaaaagaactgttttgaa
gaacaagaagatgcggggcagcttgctccaatgcccgggagcaatgatatggaggcaatg
aatccagaaaatggagatacgagcgatcaaattgttaatgcagcagctccaagtaatata
aatgaatctgaatga
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integrated database retrieval system
