Clostridium tetani E88: CTC_01058
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Entry
CTC_01058 CDS
T00112
Name
(GenBank) putative Zn-dependent hydrolase (beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ctc
Clostridium tetani E88
Pathway
ctc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTC_01058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctc03019
]
CTC_01058
Messenger RNA biogenesis [BR:
ctc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CTC_01058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AAO35641
UniProt:
Q896E9
LinkDB
All DBs
Position
1128164..1129831
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AA seq
555 aa
AA seq
DB search
MKKERDKVKVIPLGGLNEIGKNITAFEYKNDIVVIDCGLKFPDEEMLGIDIVIPDISYLL
KNKERVKGIFLTHGHEDHIGALPYVLKELNVPVYGTKLTLGILETKLKEHNLLSSVKLNC
IKPRDMIKLENCTVEFIRTSHSIADSVAIAIHTPVGAILHTGDFKIDYTPIDGHVADLSR
FAELGRKGVALMLADSTNVERPGYTMSESTVGKTFDNIFTKGKGRIIVATFASNIHRVQQ
IISTAVKFDRKVAFSGRSMENIVEVAKELGYIKAPLETFIDIDSINKYPDNKVVIITTGS
QGEPMSALSRMAASEHRKVNIVPGDTVVISATPIPGNEKLVSRVINQLFQKGADVIYEAL
ADIHVSGHACQEELKLMHTLVRPKYFIPVHGEYRHLKQHGELAEKLGMRHENIVIAGNGD
VIEVARDCIKKNGTVMSGQVFVDGLGVGDVGNIVLRDRRHLSQDGILTVVVTIERGTGMV
IAGPDIISRGFVYVRESEYLMGEAREVVKEVLRKCEENHIVEWSTIKSNIKDALRAFLYE
KTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagaaagagacaaagtaaaagtcatacccttaggtggcttaaatgaaatcggg
aaaaatattacagcttttgaatataaaaatgatatagttgtaatagactgcggtttgaaa
tttcctgatgaagagatgttaggtatagatatagtaataccggatataagctatttattg
aaaaataaagaaagggtaaaaggaatatttttaacccatggacatgaagatcatatagga
gctcttccatatgttctaaaagaattaaatgttccagtatatggtactaaattaactctt
ggaattcttgaaacaaaactaaaagagcataatttattaagctcagtaaaattaaactgt
attaagcctagggacatgataaaactagaaaattgcacggtggagtttataagaacaagt
catagtattgcggattcagtagctatagcaatacatactccagtgggagcaatacttcat
acaggagactttaaaatagactacactcctatagacggacatgtagcggatttatctaga
tttgcagaattaggcagaaaaggtgttgccttaatgctagcagatagcaccaatgtagaa
agacctgggtataccatgtcagaaagcactgtaggaaaaacctttgataatatatttaca
aagggaaaaggtagaataatagtagctacttttgcatcaaatatacatagagtgcagcaa
ataataagtactgcagtaaaatttgatagaaaagttgctttctctggaagaagtatggaa
aatatagtagaggtagcaaaggaattaggttatataaaagcacctttagaaacctttata
gacattgattctataaataaatatccagataataaggtagtaataataactacagggagt
cagggagagcctatgtcagcgctttcaagaatggcggcatcagagcatagaaaagtaaat
atagtacctggagataccgtggttatatcagcaacacctataccaggtaatgaaaaacta
gtttcaagagttataaatcaattatttcaaaaaggagcagatgttatatatgaggcttta
gcagatatccacgtttcaggacacgcgtgtcaagaagaactaaagcttatgcatacttta
gtaagacctaagtattttattccagtacatggagaatatagacatctaaaacaacatgga
gaattagcagaaaaattaggtatgcgccatgaaaatatcgttatagcaggaaatggagat
gttatagaggtagctagagattgtattaagaaaaatggtacagtaatgtcaggtcaagtt
tttgtagatggattaggagtgggagatgtaggaaatatcgtattaagagatagaaggcac
ctttcacaggatggtattttaacagtagtggtaaccattgaaagaggaacaggaatggtt
atagcaggtccagatataatctctagaggatttgtatatgtaagagaatctgaatactta
atgggtgaggcaagagaagttgtaaaagaagtactaagaaagtgtgaagaaaatcatatt
gtagagtggtctactataaagtcaaatataaaggatgcacttagggcatttttatatgaa
aaaactaagagaagacctatgatacttcctattataatggaaatttaa
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