Chlorobaculum tepidum: CT1187
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Entry
CT1187 CDS
T00088
Symbol
priA
Name
(RefSeq) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cte
Chlorobaculum tepidum
Pathway
cte03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CT1187 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cte03400
]
CT1187 (priA)
Enzymes [BR:
cte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CT1187 (priA)
DNA repair and recombination proteins [BR:
cte03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CT1187 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
PriA_C
DEAD
Helicase_C
PriA_CRR
PriA_3primeBD
HTH_34
PIF1
AAA_16
AAA_22
SLFN-g3_helicase
HTH_20
TrwB_AAD_bind
AAA_19
TrmB
AAA_30
zinc-ribbons_6
T2SSE
SWI2_SNF2
DUF2551
Pox_A32
Motif
Other DBs
NCBI-GeneID:
1006549
NCBI-ProteinID:
NP_662078
CyanoBase:
CT1187
UniProt:
Q8KD67
LinkDB
All DBs
Position
1115229..1117664
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AA seq
811 aa
AA seq
DB search
MLMYAIVYVERIYRDEPFRLSMPEGLKTTIQPGCQVLLNLARHKASAYTGYVWSLEKAGE
GDIEGEVLDLLNSGVPVLTPVMLKLALWIADYYAALPIDCLSTTLPAPLRSTVDDVVELA
GFQLESPELRVKSTGLRRSILKALATEKRLTVRQLRKRLGRRELYSAIAELERAGLVNVR
KSFVETKPRTVTTWKLAKTLPDEPEKLIARSPKKREAFELLASRPEQLFRAGEGGISRTV
FSGLVTLGLAEKIETAAPSGESLRFDEPQKEIHSLSPHQQQALDALTKALYEQQFRTFLL
HGVTGSGKTLVYIELLRRVLAEGKTAIVLVPEISLTPQTAARFRHYFGDDIQIMHSAMSD
REKYDAWQRLRQGKARIALGARSTIFAPLENVGAIIVDEEHDAAYKQDRTPRYHARDTAV
MRAMFENALCVLGSATPSFESYRNALEGKYTLLELPERIDNARMPSIELVWMPGSQRVTP
SISGALYDAIRERLKRDEQVILLQNRRGFAGSLLCLDCGHTPQCRHCNIPLVYHASDRSL
RCHYCGHIEPFRQTCPACKSENLFYKSSGTERIEEELGELFPEEKILRMDIDTTSTKDAH
ASMLTAFREKRARILLGTQMVAKGLDFPEVTLVGVLMADIGLNLPDFRAAERIYSLLMQV
AGRAGRSSMPGEVLLQLYNRDNELFQHVIRADYRHFFEAEMATRRELAYPPFTRLIKFEC
SSPSEAVAEKGAVALRKHLRPLVPEAFGTILGPAPAGISKIKGRYRSQLIIKLTGIKLSA
ALLRQVQYETLSAFRGENLVITVDVDPQHLL
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
ttgctgatgtatgcgattgtctatgtagaaagaatctatcgtgacgagccttttcggctg
agcatgccggaggggctcaaaacgacgattcagccgggctgccaggtgctgctgaacctt
gcccgccacaaagcgtcggcttacacgggctatgtctggtcgctggaaaaggcgggcgag
ggcgacatcgagggcgaagtgctcgacctgctcaacagcggtgttccggtgctgacgccg
gtaatgctgaaactcgctttgtggattgccgactactacgcagccctccccatcgactgc
ctctccaccacccttccggctccgctcaggagtacggtcgatgacgtggtggagctggcc
gggttccagctcgaaagcccggaattacgagtcaaaagcacggggttgcgccggagcatc
ctgaaagcgctggcgactgaaaaacggctcaccgtgcgccagctccgcaaacgcctcggt
cgcagggagctgtacagcgcgatcgcggaactcgaacgcgccgggctggtcaacgtccgc
aagagcttcgtggaaacgaagccccgcacggtcaccacatggaaactggcgaagacgctg
cccgatgaaccggaaaaactcattgcacgttcgccaaagaaacgcgaggcgttcgagctg
ctcgcctcgcgcccggagcagctattccgcgccggagagggcggtatttcacgaacggta
ttcagcggacttgtcactctcggcctcgccgaaaagatcgaaaccgcagcgccctctggc
gaaagcctgcgcttcgacgagccgcaaaaggagattcattccctcagtccgcaccagcag
caggcgcttgacgccttgaccaaagcgctctacgaacagcaattccggactttccttttg
cacggcgtaactggcagcggcaaaacgctggtttacatcgagttgctccgccgtgtgctc
gccgagggcaaaaccgccattgttttggtgccggaaatctcactcacaccacagaccgcc
gcccggttccgccactatttcggcgacgatatccagatcatgcacagcgccatgagcgac
cgcgaaaagtacgatgcctggcagcggctgcgacagggcaaggcacgcatcgcgctcggc
gctcgctcgaccattttcgcgccgctggagaatgtcggtgcgatcatcgtggacgaggag
cacgacgccgcctacaagcaggatcgcacgcctcgctaccacgcccgcgacacggcagtg
atgcgcgccatgttcgaaaacgcactctgcgtgctcggctcggcaacgccatcgttcgag
tcctaccggaacgcgctggagggcaagtacacactactcgaactgcccgaacgcatcgac
aacgcccgaatgccctccatcgagctggtctggatgcccggcagccagcgggtcacaccg
tcgatctcgggcgcgctctacgacgccatccgcgaaaggctcaagcgcgacgagcaggtg
atcctcctgcaaaatcgccggggcttcgcaggcagcctgctctgcctcgactgcggccac
acgccgcaatgccgccactgcaacattccgctggtctatcacgccagcgatcggagcctg
cgctgccactactgcggtcacattgaaccgttccgccaaacgtgccctgcgtgcaaatcg
gaaaatctcttctacaaaagcagtggcactgagcgcatcgaggaggaacttggagagctg
tttcccgaagagaagattctgcggatggacatcgacaccacctcgaccaaggacgcccat
gcgtcgatgctgactgctttccgcgaaaagcgcgcccgcatcctgctcggcacgcagatg
gtggccaagggcctcgactttccagaggtaacgctggtcggggtgctgatggcggacatc
ggcctgaacctgccggacttcagagccgccgaacgcatctactcgctcctgatgcaggtt
gccgggcgggcgggccgctcgtcgatgcccggcgaggtgctgcttcagctctacaaccgc
gacaacgagctgttccagcacgtcatccgggctgactaccgccactttttcgaggcggag
atggccacgcgccgcgaactcgcctacccgccgttcacccgcctcatcaagttcgagtgt
tcgtcgccatcggaagcggtggccgaaaaaggggcggtggcactgcggaagcatctgcga
ccgctggtgccggaagcgttcggcacgatcctcggccccgccccggcgggcatcagcaaa
ataaaggggcgctaccgcagccagctcatcatcaagctcaccggcatcaagctctcagcc
gccctgcttcggcaagtacaatacgaaaccctcagcgcttttcggggagaaaatcttgtc
atcacggtcgatgtcgatccgcaacatcttctgtaa
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