Comamonas testosteroni TK102: O987_04415
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Entry
O987_04415 CDS
T03218
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ctes
Comamonas testosteroni TK102
Pathway
ctes03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ctes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
O987_04415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctes03400
]
O987_04415
Enzymes [BR:
ctes01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
O987_04415
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
O987_04415
DNA repair and recombination proteins [BR:
ctes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
O987_04415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_Tnp_IS1595
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
AIJ45049
UniProt:
A0A076PE55
LinkDB
All DBs
Position
964963..965802
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AA seq
279 aa
AA seq
DB search
MPELPEVEVTRRSFADRIAGAQIEAATLGKPLRWPLGLQPQALVGRVVLGVRRRGKYLLL
DLSEGLLLMHLGMSGSLRFAGRDEAPLGEGGPHDHFDLQTSRGLLRLHDPRRFGAVVYVT
GESDALARKLLDHLGMEPLSEGFTLAAFKAGLAASRSPIKQLLLSGSVVVGVGNIYASEV
LFLSRIHPATPARDVGARKVTALYEAIRAVLAMAVEKGGTTLRDFSAANGMEGHFQLQAQ
VYGRDGLPCTHCGAAIRLMRQGQRSTYYCSSCQKAAKVL
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttacccgaagtcgaggtcacgcgccgctcttttgcagaccgtattgcgggc
gcgcagattgaagccgccaccttgggaaagcccctgcgctggcctctgggcctgcagccg
caggcgctggtcggcagggtggtgctgggggtgcgcagacgcggcaagtatctgctgctg
gacctgagcgaaggcctgctgctcatgcacctgggcatgtcgggcagtctgcgcttcgcg
ggccgcgacgaggcgccgctgggcgagggtgggccgcatgatcacttcgacctgcagaca
tcgcgtggcttgctgcgcctgcatgatccgcgccgtttcggtgccgtggtctatgttacg
ggcgagagcgatgccctggcgcgcaagctgcttgaccatctcggcatggagccgttgagc
gaggggttcacgctggcggccttcaaggccgggctggccgccagccgttcgcccatcaag
cagttgctgctcagcggcagcgtggttgtgggtgtcggcaatatctatgcctccgaggtg
ctgtttctgtcgcgtatccacccggcaaccccggcccgcgatgtgggggcgcgcaaggtc
acggctttgtatgaggccattcgcgccgtgctggccatggcggtggaaaaaggcggcacc
accttgcgcgacttttccgctgccaacggcatggaagggcattttcagctgcaggcccag
gtctatggccgcgatggcctgccttgcacgcattgcggcgcagccatacggctcatgcgc
caggggcagcgcagtacctattactgctccagctgtcagaaagccgcgaaagttctctga
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