KEGG   Comamonas testosteroni TK102: O987_11160Help
Entry
O987_11160        CDS       T03218                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ctes  Comamonas testosteroni TK102
Pathway
ctes03030  DNA replication
ctes03410  Base excision repair
ctes03420  Nucleotide excision repair
ctes03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ctes00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    O987_11160
   03410 Base excision repair
    O987_11160
   03420 Nucleotide excision repair
    O987_11160
   03430 Mismatch repair
    O987_11160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ctes03032]
    O987_11160
   03400 DNA repair and recombination proteins [BR:ctes03400]
    O987_11160
Enzymes [BR:ctes01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     O987_11160
    6.5.1.6  DNA ligase (ATP or NAD+)
     O987_11160
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     O987_11160
DNA replication proteins [BR:ctes03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    O987_11160
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     O987_11160
DNA repair and recombination proteins [BR:ctes03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     O987_11160
   NER (nucleotide excision repair)
    Other NER factors
     O987_11160
   MMR (mismatch exicision repair)
    Other MMR factors
     O987_11160
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AIJ46351
UniProt: A0A076PNS7
LinkDB All DBs
Position
complement(2383505..2384407)
Genome map
AA seq 300 aa AA seqDB search
MPEPRHRSLQEYVRWLVCACLCLGFAVLAQTTAQPPSLMLAQVWRSGLPLQDYWVSEKLD
GVRGYWDGHQLVSRGGQRIAAPEWFVRDWPATPMDGELWAGRGRFGHAQSTTAQAIPDDR
AWRQMKFMVFDLPAAPGSFDQRLPLLQRTVDAIAQDWVHMVEQRKLGSEAELQQWLSTVI
KGGGEGLMLHKGAAPYRSGRSDDLLKLKPFDDAEARVIGYRSGRGQWQGMTGALLVQTPD
GRQFSLGSGLTAQMRKSPPALGSWVTYRYQGLHEKSGLPRFARFVRVRSELGFQPEPASP
NT seq 903 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaaccacggcaccgatccctgcaggaatacgtccgctggctggtctgtgcctgc
ctttgcctgggctttgccgtgctggcccagaccacggcacagccgccttcgctgatgctg
gcccaggtctggcgcagcggcctgccgctgcaggactattgggtcagcgaaaaactggac
ggcgtgcgcggctactgggacggccaccagctcgtcagccgtggcgggcagcgcatcgcg
gcgcctgagtggtttgtccgggactggccagccacccccatggatggcgagctctgggca
ggacgcggccggtttggccatgcccagtccaccacggcacaggccatccctgacgaccga
gcctggcgccagatgaaattcatggtgtttgacctgcccgcagctccgggcagctttgac
cagcgcctgccgctgctgcagcgcaccgtggacgccattgcccaggactgggtgcatatg
gtggagcagcgcaagctgggctcggaagcggagctgcagcaatggctgagtaccgtcatc
aaaggcggcggcgagggcttgatgctgcacaagggcgccgcgccctatcgttcgggccgc
agcgacgatctgctcaagctcaagcctttcgatgatgccgaagcccgggtcataggctac
agaagcggacgcggacaatggcagggcatgactggggcactgctggtgcagaccccggac
ggtcgacagttttcactgggctccgggctgacggcccagatgcgcaaaagtccgcctgct
ctcggcagctgggtcacctatcgctatcagggcctgcatgaaaaaagcggcctgccgcgc
tttgcccgctttgtgcgcgtgcgcagcgagctgggcttccagcccgagccggcaagcccg
tga

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