Chroococcidiopsis thermalis: Chro_4375
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Entry
Chro_4375 CDS
T02360
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cthe
Chroococcidiopsis thermalis
Pathway
cthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Chro_4375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthe03019
]
Chro_4375
03009 Ribosome biogenesis [BR:
cthe03009
]
Chro_4375
Enzymes [BR:
cthe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Chro_4375
Messenger RNA biogenesis [BR:
cthe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Chro_4375
Ribosome biogenesis [BR:
cthe03009
]
Prokaryotic type
rRNA processing factors
Chro_4375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
AFY89770
UniProt:
K9U4P9
LinkDB
All DBs
Position
complement(4927198..4929306)
Genome browser
AA seq
702 aa
AA seq
DB search
MPKQIIIAEQHHIAAVFSEDQIQELVVATGRHQVGDIYLGVVENVLPGIDAAFVNIGDSE
RNGFIHVTDLGPLKLKRTAAAITELLAPQQKVLVQVMKEPTGNKGPRLTGNITLPSRYVV
LMPFGRGVNLSQRIRNENERNRLRALAILIKPAGMGLLIRTEAEGKPEEAIIEDLEAIQK
QWEEVLLKAQSTRAPSLLNRDDDFIQRVLRDMYGSDVNRIVVDSATGLKRVKQYLMNWGG
GQPPQGLLIDHHRDRIPILEYFRINAAIREALKPRVELPSGGYIIIQPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNLAGVIVVDFIDMESRRDQLQVLEHFNKAL
RADKARPQIAQLSELGLVELTRKRQGQNIYELFGRTCPTCGGLGHVVHLPGESEEREVSM
PPAAREPEWSAPQPARDSYRVMPNPRSVEPRESSSSSSSSWGLEAESFSNDFDSDRQDLM
PINHPNYQEIGDAAGNNRRRRRRRIGEGGYKEENPRATANSLTLLNDRDTEPEVESEGAI
AAEVSYGDRRDAAGGTLSRDHRGWVEKPERSKPIKPEPVKVAIDPPETIVVEMTPEEQEI
YAVMGVSPLVRLDREVKNPKSAIVQVVLPGQAPPLPQSENGTMSDSEVSTINIDSVAAAD
TPVIAAIPEITESELPATVDSETDRKTPVRRRRRRSSADGDE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattatcatagcagagcagcatcacattgctgctgttttttcagaagat
caaattcaagaactcgtcgttgctaccggacgacatcaagttggtgatatttacctcggt
gtcgtagaaaacgttttaccaggtatagatgcagctttcgtaaacattggcgattcagaa
cgaaacggttttatccacgttaccgatctcggaccgttaaagctgaaacggactgcggca
gcgattacagaactacttgcaccgcagcaaaaagtcttagtccaggtgatgaaagagccg
acgggcaataagggacccaggctcacgggtaatatcactttacccagtcgctacgtagtt
ttgatgccgtttggacggggagttaacttatcacaacggatcagaaatgaaaacgaacgc
aaccgcttgcgggctttagcaattttaattaaacctgctggcatgggtttgttaattcgt
accgaagccgaaggcaagccagaagaagcaattattgaagatctagaggcgatccaaaaa
cagtgggaagaggtgttactgaaagcgcaatctacccgcgctccctctttacttaaccgc
gatgacgatttcattcagcgcgtcttgcgagatatgtacggttcggacgtaaatcgcatc
gtggtagactctgctaccggactcaagcgggtcaagcaatacttgatgaactggggtggc
ggacagccgcctcaagggttattgatcgaccaccatcgcgatcgcattcccattttggaa
tatttccgcatcaatgccgcaattcgcgaagccctcaaaccgcgagttgagttgccttct
ggcggttatatcattattcaaccgacggaagcattaacggtcattgacgtaaactctggt
tccttcactcgttccgctacggcaagagaaaccgtattgtggacgaactgcgaagcggca
acagaaattgcccgacagttgcgtttgcgtaacctggcaggggtgatcgtggtagatttc
attgatatggaatcgcgccgcgaccagttacaagtcttagagcatttcaataaagcctta
agagcggacaaagccagaccgcaaattgctcaactgtcagaattgggtttagtcgaactg
acccgcaaacgccaaggtcaaaatatttacgaactcttcgggcgcacctgtcctacatgc
ggcggcttagggcatgtcgtacacctgccaggagaatcggaagaacgcgaagtatcaatg
ccaccagcagcacgagaacccgaatggtcagccccacagccagcacgggactcatatcgc
gtcatgcccaaccctcggtcagtagaaccccgcgaaagtagtagtagtagtagtagtagt
tggggattggaagcagaaagttttagtaacgacttcgatagcgatcgccaagacttaatg
ccgatcaaccatcccaattatcaagaaattggcgacgcggcggggaataatcggcggcgg
cggcggcggcgcatcggcgaggggggctataaagaagaaaatccacgggcaacggctaat
tcacttaccctgctcaacgaccgagatacagaaccagaagtagaatcggaaggggcaatt
gccgctgaagtttcctatggcgatcgccgcgatgccgcaggcggaacgctaagtcgcgac
catcgcggctgggtagaaaaaccagagcggtctaaacccataaagccggaacctgtcaaa
gtcgcgatcgatccaccagaaacaattgtggtggaaatgacacccgaggaacaggaaatt
tacgccgtcatgggcgtatcgcccctagtacgcttagacagggaagtgaaaaatcccaaa
tctgcgatcgtgcaagtcgttttgcctgggcaagcacctcctttgcctcaaagtgaaaat
ggcacaatgtccgattcagaagtatctaccattaacattgacagcgtggctgctgccgat
actccggttatagctgcaattcctgaaatcactgaatcggaactaccagcgacagtagac
agcgaaaccgatcgcaaaactccagtccgtcgccgtcgccgtcgttcttcggcagatggt
gacgagtag
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