KEGG   Comamonas thiooxydans: CtCNB1_1783Help
Entry
CtCNB1_1783       CDS       T01109                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ctt  Comamonas thiooxydans
Pathway
ctt03030  DNA replication
ctt03410  Base excision repair
ctt03420  Nucleotide excision repair
ctt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ctt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CtCNB1_1783
   03410 Base excision repair
    CtCNB1_1783
   03420 Nucleotide excision repair
    CtCNB1_1783
   03430 Mismatch repair
    CtCNB1_1783
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ctt03032]
    CtCNB1_1783
   03400 DNA repair and recombination proteins [BR:ctt03400]
    CtCNB1_1783
Enzymes [BR:ctt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CtCNB1_1783
    6.5.1.6  DNA ligase (ATP or NAD+)
     CtCNB1_1783
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CtCNB1_1783
DNA replication proteins [BR:ctt03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CtCNB1_1783
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CtCNB1_1783
DNA repair and recombination proteins [BR:ctt03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CtCNB1_1783
   NER (nucleotide excision repair)
    Other NER factors
     CtCNB1_1783
   MMR (mismatch exicision repair)
    Other MMR factors
     CtCNB1_1783
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ACY32529
UniProt: D0J638
LinkDB All DBs
Position
complement(2021224..2022063)
Genome map
AA seq 279 aa AA seqDB search
MGFVAVRAQTTTQPHSLMLAQVWRSGLPLQDYWVSEKLDGVRGYWNGHQLVSRGGQRIAT
PEWFVRDWPATPMDGELWAGRGRFAHAQSTTAQAIPDDRAWRQMRFMVFDLPAAPGSFDQ
RLPLLQRTVGAIAQDWVQMVEQRKLGSEAELRQWLHTVVKGGGEGLMLHKGSAPYRPGRS
DDLLKLKPFDDAEARVIGYKSGRGQWQGMTGALLVQTPDGKQFSLGSGLTAQMRKSPPAL
GSWVTYRYQGLHEKSGLPRFARFLRVRSEPGFQPEPAGP
NT seq 840 nt NT seq  +upstreamnt  +downstreamnt
atgggctttgttgccgtgcgggcccagaccacgacacagccgcattcgctgatgctggcc
caggtctggcgcagcggcctgccgctgcaggactattgggtcagcgagaaactggatggc
gtacgcggctactggaacggccaccagctcgtcagccgtggcgggcagcggatcgcgacg
ccagagtggtttgtccgggactggccggccacccccatggatggcgagctctgggccgga
cgcggccggtttgcccatgcccagtccaccacggcacaggccatcccggacgacagggcc
tggcgccagatgagattcatggtgtttgatctacccgcagctccgggcagctttgaccag
cgcctgccgctgctgcagcgcaccgtcggggccattgcccaggactgggtgcagatggtg
gagcagcgcaagctgggctcggaagccgagttgcggcaatggctgcacacagtcgtcaag
ggcggcggcgagggcttgatgctgcacaaaggcagcgccccctatcgtccgggccgcagc
gacgatctgctcaagctcaagcctttcgatgatgcagaagcccgggtcataggctacaaa
agcggacgcggacaatggcagggcatgacgggtgcgctgctggtgcagaccccggacggc
aagcagttttcactgggctccggactgacggcgcagatgcgcaaaagtccgcccgcgctc
ggcagctgggtcacctaccgctaccagggcctgcacgaaaaaagcgggctgccgcgcttt
gcccgctttttgcgcgtgcgcagcgagccgggctttcagcccgagccggcaggcccctga

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