Comamonas testosteroni CNB-2: CtCNB1_1783
Entry
CtCNB1_1783 CDS
T01109
Definition
(GenBank) ATP dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ctt
Comamonas testosteroni CNB-2
Pathway
ctt03030
DNA replication
ctt03410
Base excision repair
ctt03420
Nucleotide excision repair
ctt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CtCNB1_1783
03410 Base excision repair
CtCNB1_1783
03420 Nucleotide excision repair
CtCNB1_1783
03430 Mismatch repair
CtCNB1_1783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctt03032
]
CtCNB1_1783
03400 DNA repair and recombination proteins [BR:
ctt03400
]
CtCNB1_1783
Enzymes [BR:
ctt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CtCNB1_1783
6.5.1.6 DNA ligase (ATP or NAD+)
CtCNB1_1783
6.5.1.7 DNA ligase (ATP, ADP or GTP)
CtCNB1_1783
DNA replication proteins [BR:
ctt03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
CtCNB1_1783
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
CtCNB1_1783
DNA repair and recombination proteins [BR:
ctt03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
CtCNB1_1783
NER (nucleotide excision repair)
Other NER factors
CtCNB1_1783
MMR (mismatch exicision repair)
Other MMR factors
CtCNB1_1783
SSDB
Motif
Pfam:
DNA_ligase_OB_2
DNA_ligase_A_M
TPR_16
Other DBs
NCBI-ProteinID:
ACY32529
UniProt:
D0J638
LinkDB
Position
complement(2021224..2022063)
AA seq
279 aa
MGFVAVRAQTTTQPHSLMLAQVWRSGLPLQDYWVSEKLDGVRGYWNGHQLVSRGGQRIAT
PEWFVRDWPATPMDGELWAGRGRFAHAQSTTAQAIPDDRAWRQMRFMVFDLPAAPGSFDQ
RLPLLQRTVGAIAQDWVQMVEQRKLGSEAELRQWLHTVVKGGGEGLMLHKGSAPYRPGRS
DDLLKLKPFDDAEARVIGYKSGRGQWQGMTGALLVQTPDGKQFSLGSGLTAQMRKSPPAL
GSWVTYRYQGLHEKSGLPRFARFLRVRSEPGFQPEPAGP
NT seq
840 nt
+upstream
nt +downstream
nt
atgggctttgttgccgtgcgggcccagaccacgacacagccgcattcgctgatgctggcc
caggtctggcgcagcggcctgccgctgcaggactattgggtcagcgagaaactggatggc
gtacgcggctactggaacggccaccagctcgtcagccgtggcgggcagcggatcgcgacg
ccagagtggtttgtccgggactggccggccacccccatggatggcgagctctgggccgga
cgcggccggtttgcccatgcccagtccaccacggcacaggccatcccggacgacagggcc
tggcgccagatgagattcatggtgtttgatctacccgcagctccgggcagctttgaccag
cgcctgccgctgctgcagcgcaccgtcggggccattgcccaggactgggtgcagatggtg
gagcagcgcaagctgggctcggaagccgagttgcggcaatggctgcacacagtcgtcaag
ggcggcggcgagggcttgatgctgcacaaaggcagcgccccctatcgtccgggccgcagc
gacgatctgctcaagctcaagcctttcgatgatgcagaagcccgggtcataggctacaaa
agcggacgcggacaatggcagggcatgacgggtgcgctgctggtgcagaccccggacggc
aagcagttttcactgggctccggactgacggcgcagatgcgcaaaagtccgcccgcgctc
ggcagctgggtcacctaccgctaccagggcctgcacgaaaaaagcgggctgccgcgcttt
gcccgctttttgcgcgtgcgcagcgagccgggctttcagcccgagccggcaggcccctga
DBGET
integrated database retrieval system
