KEGG   Acetivibrio thermocellus DSM 1313: Clo1313_1979
Entry
Clo1313_1979      CDS       T01933                                 
Name
(GenBank) protein of unknown function UPF0027
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
ctx  Acetivibrio thermocellus DSM 1313
Brite
KEGG Orthology (KO) [BR:ctx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ctx03016]
    Clo1313_1979
Enzymes [BR:ctx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Clo1313_1979
Transfer RNA biogenesis [BR:ctx03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Clo1313_1979
 Prokaryotic type
   tRNA splicing ligases
    Clo1313_1979
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: ADU75026
LinkDB
Position
complement(2326909..2328099)
AA seq 396 aa
MIEIKGKYNTAKVFTNNVEPEAMAQILELCNQEFVKDSVIRIMPDTHAGAGCTIGTTMTI
DDKIVPNLVGVDIGCGMETIKLKNKNIELSKLDKVIHEFIPSGFDIRKKEHPYVRNINLD
ELLCKKHVDINRAKLSIGTLGGGNHFIEVNKDSEGNLYLVVHSGSRHLGKQVAEYYQELG
YKELVKNTEVIKEIIAKLKAEGREKEIEKEIKKIKPPNISKQLAYVQGKSYEDYLADMKL
VQKFAVLNRKAIVDEIVRRMNFKIEEQFTTIHNYIDLDSMILRKGAISARKGERVLIPIN
MRDGSLICIGKGNKDWNYSAPHGAGRLMSRAKAKEVITLKEFKESMKGIYSTTVNKSTID
ECPMAYKPMEEIIENIQDTVEIVDIIKPIYNFKAAE
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgatagaaattaaaggaaaatataatacggcaaaagtttttaccaacaacgttgaaccg
gaggcaatggctcagatattggaactttgcaaccaggagtttgtaaaggacagtgtaatc
agaattatgcctgatacccatgccggtgcaggttgtaccattggaaccaccatgaccatt
gacgacaaaattgtgccaaatctggtgggtgttgatataggctgcggaatggagaccata
aagctgaaaaataaaaatattgaattgagcaagctggacaaagtaattcatgaatttatc
ccgtcgggttttgacattcgcaaaaaagagcatccgtatgtcaggaatattaatttggat
gagctattgtgcaaaaaacacgtggatataaaccgggcaaagctgagtattggcaccttg
ggcggtggcaaccattttattgaggtgaacaaagacagtgagggaaacctgtatcttgtg
gtgcattcgggaagcagacatctgggaaagcaggttgcggagtattatcaggagttgggt
tacaaggagcttgtaaaaaacactgaagtgattaaagaaattatagcaaagctgaaagcg
gaaggccgtgaaaaggaaatcgagaaggaaataaaaaaaatcaagccgccgaatataagc
aagcagcttgcctatgtccagggcaaaagttatgaggactatcttgccgacatgaaattg
gtgcagaaatttgcggtattgaaccgcaaagcaattgtggatgagattgtgaggcgcatg
aattttaaaattgaagagcagtttaccactattcataattatattgacttagacagcatg
atactcaggaaaggtgccatttcagcacgcaaaggggaaagagtgctgattccgattaac
atgagggacggaagccttatctgtatcggcaaaggcaacaaggattggaactattccgcg
ccccatggggcgggaagactgatgagcagggctaaggcaaaagaagttataacgcttaag
gaattcaaagaatcaatgaagggaatttattcaacaacggtcaacaaatccaccattgat
gaatgtcccatggcttacaagcctatggaggaaatcattgaaaatattcaggacaccgtt
gaaattgtagatattattaagccaatatacaactttaaagcggctgaatag

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