KEGG   Cupriavidus necator NH9: BJN34_34075Help
Entry
BJN34_34075       CDS       T05121                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cuh  Cupriavidus necator NH9
Pathway
cuh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cuh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BJN34_34075 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cuh03400]
    BJN34_34075 (ligD)
Enzymes [BR:cuh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BJN34_34075 (ligD)
DNA repair and recombination proteins [BR:cuh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BJN34_34075 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AQV98910
UniProt: A0A1U9V1T5
LinkDB All DBs
Position
2:3143223..3145931
Genome map
AA seq 902 aa AA seqDB search
MAKTTRQDPGGRRAAAKATARPASKTGSKPASKSAARSTGKRAGTARPAARGTAALDKYR
RMRDFGATPEPGGAAARTRAAPRKRAAALSFVIQKHAARRLHYDFRLELGGTLKSWAVPK
GPSLDPADKRMAVHVEDHPMDYASFEGVIPAGHYGAGTVIVWDRGTWVPVGDPEAGYRSG
KLKFELRGEKLHGHWTLVRMHGSRQKEQDAWLLIKERDEAAVPASQFDVVEALPDSVLGG
TQRKPSAKRAGKAPAPEAVPPDTGSAIKALKPPRGAPRAALPLALAPQLATLVEKPPPDS
DAWRYEIKFDGYRLLARIDGKDVRLLTRQGHDWTSKLRALARDVGALGLGEGWLDGEIVV
LGKHGETDFQALQNAFDTSRVEGIQYFAFDLPYFAGHDLRKVPLAERRALLRRIFERNTS
PRLQFSEDFEASAGDMLDAACRMKLEGVIGKRADSGYVSARSNTWIKLKCTLRQEFVVTG
FTDPKGSRTGIGSLLLGVHDTGGRLRYAGNVGTGFDARTLDDLRARLDDLRADSAPFETV
PAGVRGHWVKPKLVAEVSFGSWTREGRVRHAVFHGLRTDKPAGAVSVERPAAPAGKGRAA
ARRPTAVGGKVSISHAGRVIDTDSGLTKGDLVHYYERAAPLMLPHLRGRPIAMVRAPSGV
AGQQFFQRHSDTLRVDGLNVLDRDLWPGHPALLEIVSAEALVAAAQLNVVEFHTWNASKR
SIDRPNRIIFDLDPGEGVPWAHMQEAATLMKALLDELGLASFLKTSGGRGLHVVVPVTPR
AGWDALKDFAHDVVLHVAATLPQRFVAKSGARNRVGRIFIDYLRNSMGATTVAAFSARAR
PGLGVSIPVSWEELDTLTGAAQWTVANVGPRLDALEADDPWADYAGTRQAITRAAARLAR
VR
NT seq 2709 nt NT seq  +upstreamnt  +downstreamnt
atggccaagacaacgcgacaggatccgggtgggcggcgcgccgctgcaaaagccacagcc
aggcccgccagcaagaccggcagcaaacccgccagcaaatccgccgccagatccaccggc
aagcgcgccggcaccgcccgcccggcggcacgcggcacggcggcgctcgacaaataccgc
cgcatgcgcgacttcggcgccacgcccgaacccggcggtgccgccgcgcgcacccgcgcc
gcgccgcgcaagcgtgccgcggcgctgtctttcgtgatccagaagcacgcagcacggcgg
ctgcactatgacttccgccttgaactcggcggcacgctgaaaagctgggccgtgcccaag
gggccgagcctggaccccgccgacaagcgcatggcggtccatgtcgaggaccatccgatg
gactacgcaagcttcgagggcgtgatccccgccggccactacggcgccggcacggtcatc
gtctgggaccgcggcacctgggtcccggtgggcgatccggaagcgggttaccgcagcggc
aagctcaagttcgaactgcgcggcgagaagctgcacggccactggaccctggtgcgcatg
cacggcagccggcagaaggagcaggacgcatggctgctgatcaaggagcgcgatgaagcc
gccgtgcccgcgtcgcagttcgatgtggtcgaggccctgccggacagcgtgctgggcggc
acgcagcgcaagccttcggcaaagcgcgccggcaaggcgccggcgcccgaggcggtcccg
ccggacaccggcagcgccatcaaggcgctcaagccgccacgcggcgcaccccgcgcggcg
ttgccgctggcgctggcgccgcaactggccacgctggtcgaaaaaccgccgcccgactcc
gacgcttggcgctacgaaatcaagttcgacggctaccggctgctggcgcgcatcgacggc
aaggatgtgcggctgctcacccggcagggccacgactggaccagcaagctgcgcgcgctg
gcgcgcgatgtcggcgcgctgggcctgggcgagggctggctcgacggcgagatcgtggtg
ctcggcaagcatggcgagaccgatttccaggcactgcagaatgccttcgatacctcgcgc
gtcgagggcatccagtacttcgcgttcgacctgccctacttcgccggccacgacctgcgc
aaggtgccgctggcagagcgccgcgcgctgctgcgccggatcttcgagcgcaatacctcg
ccgcgcctgcagttcagcgaggacttcgaggccagcgcgggcgacatgctcgatgcggcc
tgccgcatgaagctcgaaggcgtgatcggcaagcgcgccgattccggctatgtcagtgcg
cgcagcaatacgtggatcaagctcaaatgcaccttgcgccaggaattcgtggtgacgggc
ttcaccgaccccaagggcagccgcacgggcatcggctcgctgctgctcggcgtgcacgat
accggcgggcgcctgcgctatgcgggcaatgtcggcaccggcttcgacgcccgcacgctg
gatgatctgcgcgcgcggctggacgacctgcgcgccgattcggcgccgttcgaaaccgtg
ccggccggcgtgcgcgggcactgggtcaagcccaaactggtagccgaagtctcgttcggc
agctggacccgcgaaggccgcgtgcgccatgcggtcttccacggcctgcgcaccgacaag
cccgcgggtgcggtctctgtggaacggccggcggcgccggcgggcaagggcagggccgcg
gccaggcgccccaccgccgtcggcggcaaggtctcgatcagccatgccgggcgcgtgatc
gacaccgattcgggcctgaccaagggcgatctggtgcactactacgaacgcgccgcgccg
ctgatgctgccccacctgcgcgggcgcccgatcgcgatggtgcgcgcgccttcaggggtg
gcgggacagcagtttttccagcgacacagcgacacactgcgcgtggacggcctcaatgtg
ctcgaccgcgacctgtggccggggcatcccgcgctgctcgagatcgtgtcggccgaggcg
ctggtggcggcggcgcaactcaacgtcgtggagttccatacctggaatgccagcaagcgc
agcatcgaccgccccaaccggatcatcttcgacctggacccgggcgagggcgtgccgtgg
gcgcatatgcaggaagcggccacgctgatgaaggcgctgctcgatgaactcggcctggcc
agcttcctgaagaccagcggcggcaggggcctgcatgtggtggtaccggtgacgccgcgc
gcgggctgggacgcgctcaaggactttgcgcatgacgtggtgctgcatgtcgccgcgacc
ttgccgcagcgctttgtcgccaagagcggcgcgcgcaaccgcgtcggcaggattttcatc
gattacctgcgcaacagcatgggcgccaccaccgtggcggcgttctcggcgcgcgcgcgg
ccagggctgggtgtgtcgatcccggtgtcatgggaggaactggacacgctgaccggcgcg
gcgcaatggacggtggcaaacgtcggcccccggctcgatgccctggaagccgacgacccg
tgggcggactatgccggcacccggcaggcgatcacgcgggccgcggcccggctcgcgcgc
gtccggtag

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