KEGG   Curtobacterium sp. MR_MD2014: NI26_01570Help
Entry
NI26_01570        CDS       T04180                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cum  Curtobacterium sp. MR_MD2014
Pathway
cum03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NI26_01570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cum03400]
    NI26_01570
Enzymes [BR:cum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NI26_01570
DNA repair and recombination proteins [BR:cum03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NI26_01570
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AIV39287
UniProt: A0A0N6ZYP5
LinkDB All DBs
Position
305073..307601
Genome map
AA seq 842 aa AA seqDB search
MSPVARKTTVTVGDRRIALTNTDKVLYPATGTTKGQVIAYYERVAPWMIPHVKDRPVTRK
RWANGVDGGVFFEKNLPDSAPDWVRHHTIAHKEHDTEYPIVDDLPTLVWTAQQAALELHV
PQWRFGPRGAQQRPDRLVLDLDPGEGVGLPECVEVALAAREILHGMGLDPYPVTSGSKGI
HLYAALDGRATTAQVSDVAHELARALEQDLPDLVLSSMSRAERRGKVFVDWSQNNGNKTT
IAPYSLRGRDRPTVAAPRTWRELEERGFAQLEFEEVLDRLEAHGDLLHPVASASLAVGRT
DHGHWDGDRTQRANEAEQPARDRLAAYRAKRDASRTPEPVPEGAPTVRKDGTPTFVIQEH
HATRDHYDFRLEHEGVLVSWALPKGEPTDPGKNHLAVQTEDHPLEYGSFEGTIPQAEYGG
GTVTIWDDGTYELEKWRDGEEVIVTLHGRTNGVRRLALLHTRGRGRGKDGDEQNWLIHRT
KDQPDRLADGGGEADAARASRTPTPTPSTAERQRIGRAAPATTPPAERRAMLASPVQGEP
RLDPAAWAFEMKWDGVRALATVRDGRVTLRSRNDNDLTAQYPELQELGERAGVDGVFDGE
VVALDERGRPSFGLLQDRMGLTGARDVEAARRRTPVRLLLFDVLEADGHDLTRLGYDARR
EALLTVVEPGGVIDVPQAVDGDLDHAVAASRERGLEGVVAKKRSSRYAEGRRSEAWVKIK
HHATQEVVVGGWRPGRGRRAGGVGSLLLGVPGPDGLEYVGRVGTGFSDRDLDEIGEALGK
TERKTSPFVEVPRPDARDAHWVTPRRVGEVEFAEWTADGRLRQPSWRGWRPDKGPEDVVR
ES
NT seq 2529 nt NT seq  +upstreamnt  +downstreamnt
gtgagccccgtcgcccggaagaccaccgtcacggtcggcgaccgtcggatcgccctgacg
aacaccgacaaggtgctctacccggcgaccgggacgaccaagggccaggtcatcgcctac
tacgagcgggtggcgccgtggatgatcccgcacgtcaaggaccgccccgtgacgcggaag
cgctgggcgaacggcgtggacggcggggtcttcttcgagaagaacctgcccgactcggcg
cccgactgggtccgtcaccacacgatcgcgcacaaggagcacgacaccgagtacccgatc
gtcgacgacctgccgacgctcgtctggacggcgcagcaggcggcgctcgaactgcacgtc
ccgcagtggcggttcggtccccgcggcgcgcagcaacgtccggaccggctcgtgctcgac
ctcgaccccggcgagggtgtcgggctgccggagtgcgtcgaggtggcgctcgccgcacgc
gagatcctgcacggcatggggctcgacccgtacccggtgacgagcggctcgaagggcatc
cacctgtacgcggcgctcgacgggcgcgccacgaccgcacaggtgtccgacgtcgcgcac
gagctcgcccgggcgttggagcaggacctgcccgacctggtgctctcctcgatgagccgc
gccgagcgacggggcaaggtcttcgtcgactggtcgcagaacaacggcaacaagacgacg
atcgcgccgtactccctgcgcggccgtgaccggccgaccgtcgccgcgccgcggacctgg
cgggagctcgaggagcgcgggttcgcccagctggagttcgaggaggtcctcgaccgcctg
gaggcccacggcgacctcctgcacccggtcgcctccgcctcgctggcggtgggcaggacc
gaccacggccactgggacggcgaccggacccagcgtgcgaacgaggcagagcaaccggct
cgcgaccgcctcgcggcctaccgcgcgaagcgcgatgcgtcgcggacgccggagccggtg
cccgagggcgcaccgaccgtgcggaaggacggcacgccgacgttcgtcatccaggagcac
cacgcgacccgggaccactacgacttccggctcgagcacgagggtgtgctcgtgagctgg
gcgttgccgaagggcgagccgaccgaccccgggaagaaccacctggcggtgcagaccgag
gaccacccgctcgagtacggctcgttcgaggggacgatcccgcaggccgagtacggcggg
gggaccgtcacgatctgggacgacggcacctacgagctcgagaagtggcgcgacggcgaa
gaggtgatcgtcacgctgcacggccgcacgaacggcgtccgtcggctggcgctcctgcac
acccgagggcggggccgcgggaaggacggcgacgagcagaactggctcatccaccgcacg
aaggaccaaccggaccgtctcgccgacgggggtggcgaggcggatgcggctcgagcctcc
cggacaccgaccccgacgccgagcactgcggaacggcagcggatcggccgtgccgcgccc
gcgacgacgccgcccgccgagcgtcgggccatgctcgcgagccccgtgcagggggagccg
cgtctcgacccggcggcctgggccttcgagatgaagtgggacggcgtccgtgccctggcg
accgtgcgcgacggacgggtcaccctgcgcagccgcaacgacaacgacctgaccgcgcag
tacccggagctgcaggagctgggcgagcgggccggggtcgacggggtcttcgacggcgag
gtcgtggcgctggacgagcgcgggcgtccgtcattcggcctgctgcaggaccgcatggga
ctgaccggggctcgtgacgtcgaggctgctcggcgccggacacccgtgcgcctgctgctc
ttcgacgtgctcgaggccgacggacacgacctgacccggctcggctacgacgcccggcgc
gaggcgctcctgaccgtcgtcgagccgggtggggtgatcgacgtgccccaggcggtcgac
ggtgacctggaccatgccgtggcggcgtcgcgtgagcgggggctcgagggcgtcgtcgcg
aagaaacggtcgtcgcggtacgccgagggccgccgctccgaggcctgggtgaagatcaag
caccacgccacgcaggaggtcgtcgtcggtgggtggcggcccggcagggggcgccgggcc
ggtggcgtcggatcgctgctgttgggcgtacccggcccggacggactcgagtacgtgggc
agggtcgggacggggttcagcgaccgcgacctggacgagatcggggaggccctcgggaag
acggagcggaagacctcgccgttcgtcgaggtccctcgcccggatgcccgcgacgcccac
tgggtcacacctcgtcgggtcggtgaggtcgagttcgccgagtggacggcggacggtcgg
ctccggcagccgtcgtggcgcgggtggcggcccgacaaggggcccgaggacgtcgtccgc
gagtcctga

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