KEGG   Cupriavidus sp. USMAA1020: BKK80_26310Help
Entry
BKK80_26310       CDS       T04978                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cup  Cupriavidus sp. USMAA1020
Pathway
cup03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cup00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BKK80_26310 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cup03400]
    BKK80_26310 (ligD)
Enzymes [BR:cup01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BKK80_26310 (ligD)
DNA repair and recombination proteins [BR:cup03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BKK80_26310 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DUF4303
Motif
Other DBs
NCBI-ProteinID: AOZ09310
LinkDB All DBs
Position
2:1515017..1517656
Genome map
AA seq 879 aa AA seqDB search
MARTIRQAPATAPGVAAKAQQATGKRLQDALAPYRRRRDFRTTPEPRDEAAARPRRVAGR
HGRALAFVVQKHAARRLHYDFRLELDGTLKSWAVPKGPSLDPADKRMAVHVEDHPVDYAE
FEGVIPPGQYGAGTVIVWDRGAWIPEGDPRAAYRAGKLTFELRGEKLRGHWTLVRMHGNR
QKDQDAWLLIKGRDEASVPITELDVVEAMPDSVLSGAAGRAPRKGASARKSGKPKAAEDV
PLPRGARAARLPLTLSPQLATLVETPPADEQDWRYEIKFDGYRLLARIDGKGVRLFTREG
NDWTSRLQAVARDVGALGLPDGWLDGEIVVLGKHGETDFQALQNAFRTSSVDAIQYFVFD
LPFYAGHDLRKVRLAQRRGLLRRLFERNTSPRLQFSEEFEAGPADMLDAACRMKLEGVIG
KRADSHYVSARSKTWIKLKCTLRQEFVIGGFTDPRGSRHGIGSLLLGVHASNGHLRYAGN
VGTGFDERMLSTLRAKLDGLVTDTTPFDAPPASLNVHWVRPKLVAEVSFGSWTRDGRVRH
SVFHGLRSDKPASAVILEQPAEVPAGPARPSHKHKHGHKPTAAGGRVAISHADRIVDQAT
GITKGELVRYYERVAPLMLPHLRDRPVALVRAPDGVGGEQFFQRHGDTLRVDGIHVLDAG
LWPGHPGLLEIVSAPALVAAAQLNAIEFHTWNASKRSIAKPNRIVFDLDPGKGLSWAHMR
EGAAMVKALLDELGLVSFLKTSGGKGLHVVVPVTPRAGWDEVKDFAHAVVLHIAKLIPQR
FVAKRGAERRVGKIFIDYLRNGIGATTVAAFSVRARPGLGLSIPVGWDELESLESAAEWS
VSNCGRRLEALASRDPWEAYARTRQSISRAAARLASAPG
NT seq 2640 nt NT seq  +upstreamnt  +downstreamnt
atggcgaggaccatccggcaggctccggcaacagcaccaggcgttgccgcgaaagcgcag
caagcgactggcaagcggctgcaggatgcgctcgcgccgtaccggcgccgacgggacttc
cggaccacgccggagccgcgcgacgaggctgcggcacgcccgcgccgcgtcgccggcagg
catggcagagcgcttgccttcgtggttcagaaacatgccgcgcgccgcctgcattacgac
ttccgcctcgaactggacggcacgctcaagagctgggccgttcccaaggggcccagcctc
gatccggccgacaagcgcatggcggtgcacgtggaagaccatccggtggactatgccgag
ttcgaaggcgtgattccgcccggccaatatggcgcgggcaccgtcatcgtatgggatcgt
ggcgcgtggatcccggagggcgacccgcgtgcggcctatcgtgccgggaagctgacgttc
gagttgcgcggggagaagctgcgcggccattggacgctggtccgcatgcacggcaacagg
cagaaggaccaggatgcatggctgctgatcaagggccgcgacgaagcctccgtgccgatc
acggaactcgatgtggtggaggccatgccagacagtgtcctctccggagcggcagggcga
gcgccgcgcaagggcgcatcagcgcggaagtcaggcaagccgaaggcagcagaggacgtg
cccctgcctcgcggcgccagggcggctcggttgccgctgacgctgtcgccacaactggca
acgctggtcgagacgccacccgccgatgagcaggactggcgctatgagatcaagttcgat
gggtatcggctgctggcgcggatcgacggcaagggcgtccgcctgttcacgcgcgagggc
aacgattggacttccaggctgcaagcggtggcgcgcgacgtcggggcgctcggcttgccc
gatggctggttggatggcgagatcgtggtgttgggcaagcatggagagaccgatttccag
gcgttgcagaacgccttcaggacttcgtccgtcgatgctatccagtacttcgtcttcgac
ctgcccttctacgccggccacgacttgcgcaaggtgcgcctggcgcagcgccgcgggctt
ctcaggcggctcttcgaacgcaatacttcgccgcgcctgcaattcagcgaggaattcgag
gctggcccggctgacatgctggacgcggcgtgccgcatgaagctggaaggcgtcatcggc
aaacgcgccgattcgcactacgtcagcgcgcgcagcaagacatggatcaagctgaaatgc
acgctgcggcaggagttcgtgattggaggcttcaccgaccccaggggcagccggcacggt
attggctccttgctgctgggcgtgcatgccagcaacgggcacctgcgctatgccggcaat
gtcggcacgggtttcgacgagcgcatgctcagtactttgcgcgccaagctggatgggctg
gtcactgacacgacaccattcgacgcgccgccggcatcgctgaacgtgcattgggtgcgc
ccgaaactggtggccgaagtttcgttcggttcgtggacgcgtgatgggcgggtgcggcat
tcggtttttcatggcctgcgcagtgacaagcccgcatctgccgtcattctcgaacagcct
gccgaggtccccgccgggccagcacggccttcacacaagcataagcacgggcacaagccg
actgccgcgggcgggagggtcgccatcagccacgcggatcgcatcgtcgaccaagccacg
ggaatcaccaaaggagaactcgtgcgctactacgagcgcgtggcgccgctgatgctgccg
cacctgcgtgaccgtccggtcgccctggtgcgcgctcccgacggcgtgggcggcgagcag
ttcttccagcgccatggcgacacgctgcgggtcgacggtatccatgttctggatgccggc
ctgtggccgggacatccgggattgctggagatcgtctcggcaccggcgctggtggcggct
gcacagctcaacgcgatcgagttccacacctggaatgccagcaaacgcagtatcgccaag
cccaaccgtatcgtcttcgacctggatcccggcaagggcttgtcctgggcgcatatgcgc
gagggcgcggcgatggtgaaggcgctgctcgatgaacttggactcgtcagcttcctcaag
accagcggaggcaaggggctgcatgtcgtggtaccggtgacgccgagggcaggctgggac
gaggtgaaggacttcgcccacgccgtggtcttgcatatcgccaagctcatcccgcagcgc
tttgtcgccaaacgcggcgctgagcggcgcgtcgggaagatctttatcgactacctgcgc
aacggtatcggggctaccaccgtcgcggccttctcggtgcgtgcgcgccctggtctgggc
ctgtcgatacctgtaggctgggatgaactggaatcgttggagagcgccgcggagtggagc
gtttccaactgtgggcgccggctggaagcgctggcatctcgtgatccatgggaagcctat
gcccggacgcgccaatccatttcgcgcgctgcggcccggctggcaagcgcgcctgggtga

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