Cyprinodon variegatus (sheepshead minnow): 107080755
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Entry
107080755 CDS
T06110
Name
(RefSeq) low-density lipoprotein receptor-like isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107080755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107080755
Membrane trafficking [BR:
cvg04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
107080755
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
SGL
EGF_CA
Motif
Other DBs
NCBI-GeneID:
107080755
NCBI-ProteinID:
XP_015224446
Ensembl:
ENSCVAG00000015349
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MGLPLLLLLCLIGHSKALTCEPGHFQCGNGICIPALWVCDGTDDCGDGTDELPGTCVAKT
CKPSEFRCPDRVTRCIPNSWRCDGEADCVNGADEENCVPKLCTDSEFTCTSGQCVSSAFV
CDKDADCDDESDEASCPPITCSSASFQCNNTVCVPRLWACDGDEDCSDGSDEWPENCATK
TPTRSAVHQCSSQEYQCGSGDCIHSSWKCDGDTDCLDRSDEAHCAHSTCRPDEFECGDGT
CIHGSRQCNQQYDCSDRSDEVGCVNVTHCDGPNHFKCRNGDCITMEKVCDKRRDCRDWSD
EPLRECGSNECLYNNGGCSHVCNDLKLGYECLCPTGYHLVDKRRCEDIDECANPETCSQI
CINQMGGYKCDCEGGYQMDPATHACKAIGTIAYLFFTNRHEVRKMTLDKSEYTRVIPRLK
NVVALDMHIATKEMYWSDLSQKKIYRTPMDSAEDFSQHHVVIDSDIEGPEGIAFDWVHGN
LYWTDSIRKTVSVVTADGSRRKTLFYQDLSKPRAIVVDPHSNFIYWTDWGNPAKIERGGL
NGVDRSALVTDNIVWPNGITLDLLTQRLYWVDSKLHTLSSIDVQGGGRRTLIIDEDKLAH
PLGLTVFEEKVFWTDVSNNAILSANRLTGSDIAPVAEHLSSPEDIILYHNLKQPAGRDWC
QVSNSSCEFMCLAAPQIGRHPPKYTCVCPDNMMLAEDMRTCVTAAVQTSTASFESQSTTI
HPPLGPTITPKTTPKTTQKPQVHTTTTVPLIITSTVTRPVRRTTRPIVRTTTSLPKKPSP
RPEEPKILHTTTVAAVTTPGAPPKVAASLPKTTSSTTTALYFVLPLAFICLVAVGGVLLW
RYYRLKNTNTIHFHNPVYQKTSEDQVHIWRSQSFEGYSYPKRQIVSLDEEADNPTFCEN
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgggactccctctgctccttctcctctgcctcattggtcacagcaaggctttaacgtgt
gagcccggccatttccagtgtgggaatgggatctgcatcccagccctttgggtgtgtgac
gggacagatgactgtggagacggcacagatgaacttcctggtacctgtgtggccaaaaca
tgcaaaccatcagagtttaggtgcccagaccgcgtgacccgctgcataccgaacagttgg
cgctgtgatggagaagctgactgtgtaaatggagctgatgaagagaactgtgttcccaag
ctgtgcacagattcagagtttacctgcacaagcggccaatgtgtctcctctgccttcgtg
tgtgacaaagatgcagactgtgatgatgagagcgacgaggcctcctgcccgccaatcacc
tgcagctctgcgtccttccagtgcaacaacaccgtctgtgttccccgactctgggcctgt
gacggcgatgaagactgctctgacggttcagacgagtggcctgagaactgtgccacaaag
actccaacccgctctgccgttcaccagtgctcctcccaggaataccagtgtggcagtggg
gattgcatccacagcagctggaagtgtgacggagatactgactgcctcgatcggtcagat
gaagctcactgtgcccattccacgtgtcgtccagatgagtttgaatgtggtgacggtacg
tgcatccatggcagccgccagtgcaaccagcagtatgactgcagcgacaggagcgatgaa
gtcggctgtgtcaacgtgacccactgtgacggaccgaaccattttaagtgtcgcaacggg
gattgtataaccatggagaaagtgtgtgacaagaggcgcgactgcagggattggtcagat
gagcctcttagggagtgtggctctaatgagtgcctctacaacaacggtggctgctctcat
gtttgcaacgacctgaagctcggttacgagtgcttgtgtccaaccggttaccacctagtg
gataaaagacggtgtgaagacattgatgagtgtgcaaacccagaaacctgcagccaaatc
tgcatcaaccagatgggcggctataaatgtgactgtgagggaggttatcagatggaccca
gcaacgcatgcttgtaaagctataggtacaatagcctaccttttcttcaccaatcgccat
gaagtcagaaaaatgacgctggacaaaagcgaatacacaagagtaatcccccgactaaag
aacgtggtagccctggacatgcacatagccaccaaagagatgtactggtcggacctctcc
cagaagaaaatctacaggactccaatggactccgcggaggacttctctcaacaccatgta
gtgatcgacagtgatattgagggtcctgaaggtatagcgttcgactgggtccatggtaac
ctctactggaccgacagtattcggaaaactgtttccgtggtaactgctgatggtagccgc
cgcaaaactctcttctatcaagacttatcaaagccccgtgccattgtggtagatccacac
agcaactttatttactggactgattgggggaatcctgcaaagattgagagaggaggcctt
aatggagttgaccgctctgctttggtcactgataacatcgtgtggcctaatgggatcaca
ctagatctgctgacccagcggctctactgggtagactctaagctgcacacgctctccagc
atcgacgtgcaaggcggtggccggcgcaccctgatcattgatgaggataaactggctcat
ccattgggacttacagtctttgaggaaaaagtattctggacagatgtcagtaataatgcg
atcctcagtgccaacaggctgacaggcagcgatatcgcacctgtggcagaacatctttca
tcccctgaagacatcattctttaccataacctcaaacaacctgctggaagggactggtgt
caggtgtccaacagcagctgtgaatttatgtgcctagctgcccctcaaataggaagacat
cctccaaaatatacctgtgtttgtccagataatatgatgctagcagaagatatgaggaca
tgtgtgactgcagctgttcaaacttccacagcttcttttgagtctcaatccacaactatc
caccctcctcttgggcctaccatcacaccaaagaccactccaaagacaacacagaagcct
caggttcacactactacaacagtacctctcataattaccagcacagtcactcggccagtc
cggcgtaccactaggcctatagttcgtaccacaacatctttgccaaagaagccttctcct
cggccagaagagcctaaaatcttgcacaccaccacagttgctgctgtcacaactccaggt
gctccaccaaaagttgctgcatctttacccaaaactacctccagcaccacaacagctctt
tactttgtcctacctctggcgttcatctgtctggtggcagtcggaggcgtgctactatgg
agatactatcgactgaagaacacaaacacaattcactttcacaaccctgtatatcagaaa
acctctgaagaccaagtgcacatttggaggagccaaagctttgaaggttactcttatcct
aaaagacagattgtgagcttggatgaagaggcagacaaccctaccttctgtgaaaactga
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