KEGG   Cyprinodon variegatus (sheepshead minnow): 107093649
Entry
107093649         CDS       T06110                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03082  ATP-dependent chromatin remodeling
cvg03083  Polycomb repressive complex
cvg04110  Cell cycle
cvg04330  Notch signaling pathway
cvg04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107093649
   03083 Polycomb repressive complex
    107093649
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    107093649
   04350 TGF-beta signaling pathway
    107093649
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    107093649
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cvg03036]
    107093649
Enzymes [BR:cvg01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107093649
Chromosome and associated proteins [BR:cvg03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     107093649
   HDAC complexes
    Sin3A-HDAC complex
     107093649
    BRAF-HDAC complex
     107093649
    REST complex
     107093649
    SHIP complex
     107093649
    MiDAC complex
     107093649
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     107093649
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107093649
  Chromatin remodeling factors
   NuRD complex
    107093649
SSDB
Motif
Pfam: Hist_deacetyl RNA_polI_A34
Other DBs
NCBI-GeneID: 107093649
NCBI-ProteinID: XP_015244324
Ensembl: ENSCVAG00000017994
UniProt: A0A3Q2G0V5
LinkDB
Position
Unknown
AA seq 482 aa
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTFETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEDEEDSDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNAANHKKAKRVKKEEEKEGEEKKEVKEEEKEEEKMDTSGPNEEIK
TT
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattattatgacggtgatgtgggg
aactattactacggccaaggccatcccatgaaaccccacaggattcgtatgacacacaac
ctcctcctcaattatggactgtacaggaaaatggagatctatagaccacataaagccagc
gctgaagagatgacgaagtaccacagtgacgactacatcaagttcctgaggtccatccgc
cctgacaacatgtctgagtacagcaaacagatgcagagatttaacgttggagaggactgt
ccggtttttgatggtctctttgagttttgccagctgtcaacaggcggatcagtcgctgga
gccgtgaagctgaacaagcagcagacagacatcgccattaactgggcgggggggctccac
cacgccaagaagtctgaggcgtctggtttctgctacgtcaacgacatcgtcctggccatc
ctggagctgctgaaataccaccagagggtgctgtacatagacatcgacatccaccatgga
gacggagtagaagaggccttctacaccacagatcgggtcatgacggtttctttccacaaa
tatggggaatacttccccggcactggagatctgagggacatcggcgcaggaaagggcaag
tactacgctgtgaactaccctctgagggacggcattgatgatgaatcctatgaagccatc
ttcaaaccgatcatggctaaagtcatggaaatgtaccagcccagtgcggtggttctgcag
tgtggagcagattctctctctggagacagactgggctgctttaacctcaccattaaaggc
catgcgaagtgtgtcgaatacataaaaagcttcaaccttcccctgctgatgctcggcgga
ggcggctacaccattcgtaacgtagcccgttgctggacctttgaaacggccgtcgccctg
gattcctccatcccaaacgagctgccctacaacgattacttcgaatacttcgggcccgac
tttaagctgcacatcagcccgtccaacatgaccaaccagaacaccaacgagtacctggag
aagatcaaacagcggctctttgagaacctccgcatgctgcctcacgccccaggagtccag
atgcaggccatccccgaggacgctcctcaccccgacagcggagacgaggatgaggaagac
tccgacaaacgcgtctctatccgagcccacgacaagaggatagcgtgtgaggaggagttc
tccgactccgaggacgaggcagagggccaaggaggaggccgcaggaacgcagccaaccac
aagaaggcaaaaagggtgaagaaggaggaagagaaagaaggagaggaaaagaaagaagtg
aaagaagaagagaaggaagaggagaagatggatacgtctggaccaaatgaggagataaag
acgacctga

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