Cyprinodon variegatus (sheepshead minnow): 107093649
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Entry
107093649 CDS
T06110
Name
(RefSeq) probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03082
ATP-dependent chromatin remodeling
cvg03083
Polycomb repressive complex
cvg04110
Cell cycle
cvg04330
Notch signaling pathway
cvg04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107093649
03083 Polycomb repressive complex
107093649
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
107093649
04350 TGF-beta signaling pathway
107093649
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
107093649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvg03036
]
107093649
Enzymes [BR:
cvg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
107093649
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
107093649
HDAC complexes
Sin3A-HDAC complex
107093649
BRAF-HDAC complex
107093649
REST complex
107093649
SHIP complex
107093649
MiDAC complex
107093649
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
107093649
Heterochromatin formation proteins
Other heterochromatin formation proteins
107093649
Chromatin remodeling factors
NuRD complex
107093649
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
RNA_polI_A34
Motif
Other DBs
NCBI-GeneID:
107093649
NCBI-ProteinID:
XP_015244324
Ensembl:
ENSCVAG00000017994
UniProt:
A0A3Q2G0V5
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTFETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEDEEDSDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNAANHKKAKRVKKEEEKEGEEKKEVKEEEKEEEKMDTSGPNEEIK
TT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattattatgacggtgatgtgggg
aactattactacggccaaggccatcccatgaaaccccacaggattcgtatgacacacaac
ctcctcctcaattatggactgtacaggaaaatggagatctatagaccacataaagccagc
gctgaagagatgacgaagtaccacagtgacgactacatcaagttcctgaggtccatccgc
cctgacaacatgtctgagtacagcaaacagatgcagagatttaacgttggagaggactgt
ccggtttttgatggtctctttgagttttgccagctgtcaacaggcggatcagtcgctgga
gccgtgaagctgaacaagcagcagacagacatcgccattaactgggcgggggggctccac
cacgccaagaagtctgaggcgtctggtttctgctacgtcaacgacatcgtcctggccatc
ctggagctgctgaaataccaccagagggtgctgtacatagacatcgacatccaccatgga
gacggagtagaagaggccttctacaccacagatcgggtcatgacggtttctttccacaaa
tatggggaatacttccccggcactggagatctgagggacatcggcgcaggaaagggcaag
tactacgctgtgaactaccctctgagggacggcattgatgatgaatcctatgaagccatc
ttcaaaccgatcatggctaaagtcatggaaatgtaccagcccagtgcggtggttctgcag
tgtggagcagattctctctctggagacagactgggctgctttaacctcaccattaaaggc
catgcgaagtgtgtcgaatacataaaaagcttcaaccttcccctgctgatgctcggcgga
ggcggctacaccattcgtaacgtagcccgttgctggacctttgaaacggccgtcgccctg
gattcctccatcccaaacgagctgccctacaacgattacttcgaatacttcgggcccgac
tttaagctgcacatcagcccgtccaacatgaccaaccagaacaccaacgagtacctggag
aagatcaaacagcggctctttgagaacctccgcatgctgcctcacgccccaggagtccag
atgcaggccatccccgaggacgctcctcaccccgacagcggagacgaggatgaggaagac
tccgacaaacgcgtctctatccgagcccacgacaagaggatagcgtgtgaggaggagttc
tccgactccgaggacgaggcagagggccaaggaggaggccgcaggaacgcagccaaccac
aagaaggcaaaaagggtgaagaaggaggaagagaaagaaggagaggaaaagaaagaagtg
aaagaagaagagaaggaagaggagaagatggatacgtctggaccaaatgaggagataaag
acgacctga
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integrated database retrieval system