Cyprinodon variegatus (sheepshead minnow): 107100637
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Entry
107100637 CDS
T06110
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03022
Basal transcription factors
cvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107100637 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
107100637 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107100637 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107100637 (gtf2h1)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107100637 (gtf2h1)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107100637 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
107100637
NCBI-ProteinID:
XP_015254694
Ensembl:
ENSCVAG00000013197
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MASLSEEVLLVVKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYSDIRCQKISPDGK
AKIQLQLVLHTGESTTFHFANESTALKDRDAAKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLGGVNNGEPAPYNNKQEVGISGAFLADIRPQTDG
CNGLKYNLTADIIESIFRTYPAVKQKYSENVPHNLTEKEFWTRFFQSHYFHRDRINTSSQ
DIFSECAKQDEKGLKSLVTQGVKNPLVDLLSLEDKTLDEGYGISKTLPSTSNANKTVKES
SNSAIIKRFNHHSAMVLAAGSRKGDVPNDQASETSSTDGNSRDSDFFQPPLKKVKLQEAI
EYEDLQRENAPKTVALKLKKSDRYAHGPVPLQSQQYTTSQDIINSVNYIRQEMANYXXXY
IQVLSSTTATSAIASLSPGGVLMQTVGQQSINQMVPTDIQGELKHLYIAAGELLRHFWSC
FPVNTPFLEEKVTKMKTNLERFQMTKLRPFQEKIQRQYLSTNLTGHLEDMFQTAYNKFHI
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcatctctgtcagaggaggtgctgctggtggtgaagaaagtccgtcagaggaagcag
gatgggaccctctacctgatggcagaaagaatagcctggggtccagaaggcaaagaccgc
ttcactgtcagccacctctattcagatatccgctgtcagaagatcagtcctgacggcaaa
gccaagattcagctccagctggttcttcacactggagaaagtaccacattccacttcgcc
aatgagagcactgcgctgaaagaccgcgatgctgccaaggagctgctgcagcagctgctg
ccaaagttcaagaagaaggccaacaaggagctggaggagaaaaacaggatgcttcaggaa
gatccggtgcttttccagctttataaagaccttgtggtgagccaagtcatcagtgctgag
gagttttgggccaaccggttaggaggcgttaataatggggaacctgcgccttacaacaac
aaacaggaagtcgggatatctggagcatttctagcggatatcaggccacagactgatggc
tgtaacggcttgaagtataatctgacggcggacattattgagtccatttttagaacatat
cctgcagtgaagcagaagtatagcgagaacgtgcctcataacctgacggagaaggagttc
tggacccgttttttccagtcccattatttccacagagaccgaatcaacaccagttcacag
gatatcttctccgagtgtgccaagcaggatgaaaaaggtttaaaatccctggtgacccaa
ggagtaaagaatccattggtcgaccttttgtccttggaggataaaacactcgacgagggt
tatggaataagcaaaaccctaccttcaacttcaaatgcaaacaagacggtgaaggagagc
agcaactctgcaattataaagcgatttaatcatcacagcgccatggtgctggcagccggc
tcacgcaaaggagatgtgcccaatgatcaagctagtgagactagcagcactgatggcaac
tccagagattctgatttctttcagcctcctctgaagaaggtgaaactacaagaagccata
gaatatgaggatcttcaaagggaaaatgcacctaaaacagtggcgttaaaactgaagaag
tctgaccggtacgctcatggtcccgttcctcttcagtctcaacagtatacaaccagccaa
gacatcatcaactccgtcaactatatccgtcaagagatggcgaattacnnnnnnntttat
attcaggtgttgtccagcacaacagcaacgtccgccattgcatctctctctccaggaggg
gtccttatgcaaactgttggacagcaatcaataaaccaaatggttcccactgatattcaa
ggagagctgaagcacctttatattgctgctggggagctactgagacacttctggtcctgt
tttcctgtaaatacgccatttttggaggaaaaggtgacaaaaatgaagacaaacttggaa
cggtttcaaatgaccaagcttcgtccttttcaggagaaaatccagcgtcagtacttaagt
acaaaccttacaggccacctggaggacatgtttcagacggcctataacaagtttcatatt
tggcagacccgtaggatgatgaggaaaacctga
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