Cyprinodon variegatus (sheepshead minnow): 107102165
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Entry
107102165 CDS
T06110
Symbol
scarb1
Name
(RefSeq) scavenger receptor class B member 1
KO
K13885
scavenger receptor class B, member 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
107102165 (scarb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107102165 (scarb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107102165 (scarb1)
Membrane trafficking [BR:
cvg04131
]
Endocytosis
Phagocytosis
Scavenger receptors
107102165 (scarb1)
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107102165 (scarb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CD36
PorA
DUF4534
CyanoTRADDas_TM
Motif
Other DBs
NCBI-GeneID:
107102165
NCBI-ProteinID:
XP_015256852
Ensembl:
ENSCVAG00000020210
LinkDB
All DBs
Position
Unknown
AA seq
496 aa
AA seq
DB search
MAIEKSKIAIGFIVAGILMLLFGIITAIIGPTVMKNEVEKNTIIDPKNDLSYTMWRDLPV
PFFMSVYFFHVLNPEEILKGEKPMVEQRGPYVYRKQCQKENITFHPNSTVSYKEYRQYFF
EPSMSVGNESDVITIPNMLVLGAAVMLEDMPYAVRLLISATFKTFKEGPFLTKTVGELMW
GYDSDLVAFLNKYLPGMLPASGKFGLFSEFNNSNTGLFTIHTGRDDITKVHKVDSWNGLT
ELKYWKTPQCNMINGTAGQLWPPFMTKESTLNFYSPDACRSLELVYQRSGEMQGIPLYRF
VAPNTMFANGTDYPPNEGFCPCRQSGLLNVSSCRHNSPVFISHPHFFNADPALLDYVLGL
SPTEEEHGLFIDIHPLTGVPLNVSIRLQLNLYMKRVSGITETGKISEVVMPMLWFEENGY
IDGPILSTFKTQLVILPAVMEYMQYIFIALGLLTIVVAVFVFYKVKGKTSEGATVPREIT
STSTGERTPLLQVKKH
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggccattgaaaaatctaaaatagccattggatttatagtggcaggcattctgatgctg
ctgtttgggataattacagcaattattgggccgacagttatgaagaacgaggtagaaaag
aacaccatcattgatccaaagaatgacctctcctacaccatgtggagggacctcccggtg
cccttcttcatgtccgtctacttttttcacgtcctcaatcctgaagagatcctgaaagga
gagaagcccatggtggagcagagaggaccttatgtgtacagaaaacagtgtcagaaggag
aacatcacgtttcaccccaacagcacagtgtcctacaaagaatacagacaatacttcttt
gagccctccatgtctgtagggaacgagtcggatgtcatcaccatccccaacatgttggtg
ctgggtgcagcggtgatgctggaggacatgccctacgccgtgcggctgctgatcagtgcc
accttcaagactttcaaagaagggcccttcctgaccaagacggtgggagaactgatgtgg
ggctacgacagcgatctggtcgcgttcctcaacaaatacctgccggggatgctgccagcg
agtggaaagtttggccttttttcagagtttaataactcaaacactggattattcacaatc
cacactgggagagatgacatcacaaaggtccacaaagttgattcctggaatggattaact
gagctgaaatactggaagacgcctcagtgtaacatgatcaacgggacagccgggcagctg
tggccacctttcatgactaaagagagcactttaaatttctacagcccggacgcctgcaga
tctttggagcttgtttatcagcggtctggggagatgcaaggcatccctctatatcgattt
gttgcacctaacaccatgtttgctaacgggacagattaccctccaaatgaaggcttctgc
ccctgcaggcagtctggcttgctaaatgtcagcagctgccgccacaactcccccgtcttc
atctctcatcctcacttcttcaatgccgatcctgcactgctggactacgtgttgggtctc
agccctaccgaagaggagcatggccttttcattgacattcatccactcacaggcgtcccc
ctgaacgtgtccatccgcctgcagctcaacctctacatgaagagagtatcaggaatcaca
gaaacaggcaagatttcagaggtggtgatgcccatgctgtggtttgaggagaatgggtac
atcgatgggccgatcctctctacgtttaaaacccagctggttattctgcctgctgtcatg
gagtacatgcagtacatcttcatagccctcggcctgctaaccattgtagtggctgtcttt
gttttctacaaggtcaagggaaagactagtgaaggtgccactgtaccaagggaaatcacg
agcacttcaactggagaacgaacccctctgctacaagtcaagaaacactga
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