Cyprinodon variegatus (sheepshead minnow): 107102541
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Entry
107102541 CDS
T06110
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107102541
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107102541
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107102541
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107102541
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fibrinogen_C
fn3
Pur_ac_phosph_N
EGF_Tenascin
EGF_2
Interfer-bind
Motif
Other DBs
NCBI-GeneID:
107102541
NCBI-ProteinID:
XP_015257386
Ensembl:
ENSCVAG00000008468
LinkDB
All DBs
Position
Unknown
AA seq
1310 aa
AA seq
DB search
MLFTLGLVFLLTPFPSFQTPTIESRDAIGSNMTKTNAVLTFSKPKTTAPPSKKSGHPSLK
TNTVTVTVPTVSSNQKSTIASPMMTNKSKLSVAVIHTTPQPAAKAPKAPVSNTNRDKHRV
NPATSAKQPSLSEGRTSKDKPGPTGSPKDQTTLTKISSGSTLKTKNKHSDNQTMSAKSPS
TSNEKNAKDKPNQNVQSILPSDNKTTKDKTTVSGNQTVHDIHLSSSDDKSKHKPTINVQS
LPTNGSKIASDKPRAKHDERSKDYPSPNVVTLPRNSNKMTKDQPTVSPTQTVSDASLHNR
GRNSKNKTTQNTRPSPSGTKTINESHKVNPTHPHSGHEMTIDKPGQNKNQSEKTGGSEAD
KETGSKSISHTPLIDAACTDNTASSQPIEVVISNNDESSHTKEQKLTLKPGAPLVMTHKI
KLLPGGCTGGCEAEMVALKERLTRLEREMSSLKEKCPCSANCPNNCSDHGKCEKGKCICH
KGFIGLDCSKCAKDVDCSKIDIKKKSSEETDCTQKVISSTTSRSNPDALRKKSHSKDSSS
PSASSPTTVDASPSNNNKNKVEEARRGEPEMKVPPSNDTEIRNEERTRKPTFKPPHLKDD
PKANVTLSKERTSNNTSKSKNENKNKSVEQTPVTNKNTATEPKKKDHLEKKNELSIDYGK
NSTQSKTNIKVHENKTAIVDSGMSTRKHGGLGSVKAVNISSSSFIITWLAPQHMFKNFTV
IMRQPQAGSAKDVNGAEGTMEKDLMSNNRNLTEVQTESINKTVSSGKSIGSRGKTETKRI
SRVVPGSVRSLEFSNLKANTHYVVHVYGSTANKRSTIHRVTATTGPEPPKELVFSNVTES
SLGISWTKPNSIFTGFRITYINIVTGKSQFVTVGPQQSNVVLSNLSAGSSYIISVSTTKG
KAYSDELTSVITTVPAPPTNLQVINVTDNRALLRWTPSLGKVDRFIISYESYKTPNVTVT
VMLSGNSVQYQLKGLQKGTLYKVKVRTQKNSLQSMGMSTTFMTATVVKPREVGARSALIS
WGPSAVYQSYKVIYQAEKEEAKEVILEPTLTEYKLTGLMPSSSYFVVVQGEKNEKYTSLV
TSQFVTGKLRFPFPTECSQELLNGALESGEVNIYPQGKEGHSVRVYCDMETDGGGWTVFQ
RRMNGKTDFFRTWSEYKAGFGNLSEEFWLGNELLHILTNMGPVSLRVDLRSGNDTAYARY
TNFSVASEERNYTLTVSGYTGTAGDSMRYHNGRPFSTRDKEPNSLGIHCAKAYMGGWWYK
NCYKVNLNGLYGMNSDNQGIVWIDWKGKDSSIPFSEMKFRPSRFSPATHG
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttacccttggacttgtctttctcctaaccccatttccctcctttcaaaccccg
accattgagagtagagatgccataggaagcaatatgaccaaaaccaatgctgttcttact
ttttcaaaaccaaaaaccactgctcccccttccaaaaagagtgggcatccctccctaaag
acaaacacagtaactgtgacagtacctactgtatcctccaaccaaaaatctacaatagcc
agtccaatgatgaccaacaaaagcaagcttagtgttgcagtaattcataccactccacaa
ccagcagcaaaggctcccaaagcccctgtcagtaacaccaacagagacaaacacagagtc
aacccagctacttcagctaagcagccatcactcagtgaaggaaggactagcaaagacaag
cctggacctactggatcacccaaagatcagacaacactcacaaagatttcatcaggcagc
acgttaaaaaccaaaaacaagcattctgataatcaaactatgtctgcaaaatctccttcc
accagtaatgagaagaatgctaaagacaaacccaatcagaatgttcagtctattctcccc
agtgacaataaaaccaccaaggacaagacaacagtttctggtaaccagaccgtccatgat
attcacctcagcagcagtgatgacaagtccaaacacaagcctacaataaatgtccagtct
ttgcctaccaatggtagcaaaattgccagcgacaagcctagagccaagcatgacgagagg
tccaaagattacccttctccaaatgttgtgactttacccagaaacagtaataaaatgacc
aaagaccaacctacagtatcacctactcaaactgtttctgatgcttcccttcataatagg
ggtagaaattcaaagaacaagactactcaaaatactcggccctctcccagtggcactaag
accataaatgaaagccataaggtgaaccccacccaccctcacagcggtcacgagatgacc
atagataagcctggtcaaaacaaaaatcaaagtgaaaaaactggtggctcagaagcagat
aaagaaacaggctccaagtctataagtcatactcctttaatcgatgcagcctgcacagac
aatacagcttcttcacagcccatcgaagtggttatcagtaataatgatgagtcgagccac
acaaaggagcagaagctgacgctgaagcctggtgctccactggtgatgacacataagatc
aagctgctacctggtgggtgtacggggggttgtgaagccgagatggttgctctgaaagaa
cgcctgacccgactggaaagagagatgtcttccctaaaagagaaatgtccatgttctgca
aattgccccaataactgtagtgaccatgggaaatgtgagaaggggaaatgtatttgtcat
aaaggattcataggtcttgactgcagcaagtgtgcaaaagatgttgactgtagcaaaata
gatatcaagaagaagagttctgaagaaactgactgtacacagaaagtgatatcgagtaca
accagtcgatctaatcctgacgctcttaggaagaagtcccacagcaaagattcttccagt
ccctctgcaagcagtcctactacagttgacgcttctccatcaaacaataacaaaaataaa
gtagaggaggcccgcagaggggaaccagaaatgaaggttcctccatcaaatgatacagaa
attagaaacgaagaacgtaccaggaaaccaacttttaaaccgccacatttaaaagacgat
cctaaagcaaatgtcacactgagtaaagaaaggaccagcaacaacacaagtaaaagcaag
aatgaaaacaaaaataagtctgtggagcagaccccagtgacaaacaagaatactgcaaca
gaaccaaaaaagaaggatcatctggaaaagaaaaatgagctatccattgattacggaaaa
aattcaactcaatcaaaaacgaacatcaaagtccatgagaacaagacagcaatcgttgac
tctgggatgagcaccagaaaacatggaggtttaggatcagtgaaggctgtgaatatctct
tcctctagcttcatcatcacatggttagctccacaacatatgttcaagaactttactgtg
atcatgagacagcctcaggcaggtagtgccaaggatgttaatggggcagagggaactatg
gaaaaagacttgatgtctaacaataggaacttgactgaggtccaaacagagagcatcaac
aaaactgtctcctctggtaaaagtattggatcgagaggtaaaactgaaaccaagaggatc
tcaagagtggtgcctggcagtgtgcgatccttggagtttagcaatctcaaggcaaacaca
cattatgttgtacatgtatatggcagtacagcaaacaagaggtcgacgattcacagagtt
acagcaaccacaggtcctgagccaccaaaagaactggttttcagtaatgtaacagagtct
tctttgggtatttcgtggaccaaaccaaacagcatatttacaggattcaggataacatac
attaacattgtaacagggaagagccagtttgtgactgtgggacctcaacagtcaaatgtg
gttctgtccaacctgtctgctggatcatcctacatcatcagtgttagcacaaccaaagga
aaggcttacagtgatgaactcacctcagttattaccacagtacccgcccctccaacaaat
cttcaagtcatcaatgtaacagataacagagctttgctcagatggacacccagcctggga
aaagtggaccgtttcatcattagctatgagtcctacaagactcccaatgtcacggtaaca
gtgatgctttcgggaaactcagtgcagtaccagctgaaaggcctacagaaaggtacactc
tataaggtcaaagtgaggacccaaaagaacagcctccagagtatggggatgtccactaca
tttatgacagccactgtggttaaacccagggaagttggcgctcgttctgccttgatttct
tggggaccttccgctgtttatcaaagctacaaagtgatctatcaggctgaaaaagaggaa
gcaaaggaagtaatcctggagccaaccttgacagagtataaactgaccggcctgatgcct
tcatcatcttattttgttgtggtacaaggcgagaaaaatgagaagtatacatccctggtc
acatcacagttcgtcactgggaagctgcgttttccgttccccactgaatgctcacaggaa
ttgctaaatggtgctcttgagtccggggaagttaacatctaccctcaaggaaaagagggg
cattcagtgagagtctactgtgacatggagacagatgggggcggatggacggttttccag
agaaggatgaatggcaaaacagatttcttcagaacctggagtgaatacaaagctggtttt
ggaaatctgagtgaagagttctggcttggaaatgagcttctgcacatcctcaccaatatg
ggccctgtgagtttgagagtggatttaagatctggaaatgacacagcttatgctcgctac
accaacttctctgttgcttcagaagagaggaactacactttgactgtatccggatacaca
ggaacagcaggcgactcaatgaggtaccataatggacgtccattctcaacccgagacaag
gaaccaaactctctgggaatccactgtgccaaagcctacatggggggctggtggtacaaa
aactgctacaaagttaacctcaatggcctttatggcatgaacagtgataatcagggaata
gtctggatagactggaaaggcaaagactcctctattccattctctgagatgaagttcaga
ccctcccggttttccccagcaactcatggctaa
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