KEGG   Chlorella variabilis: CHLNCDRAFT_57546
Entry
CHLNCDRAFT_57546  CDS       T02924                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
cvr  Chlorella variabilis
Pathway
cvr03013  Nucleocytoplasmic transport
cvr03015  mRNA surveillance pathway
cvr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHLNCDRAFT_57546
  09122 Translation
   03013 Nucleocytoplasmic transport
    CHLNCDRAFT_57546
   03015 mRNA surveillance pathway
    CHLNCDRAFT_57546
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvr03019]
    CHLNCDRAFT_57546
   03041 Spliceosome [BR:cvr03041]
    CHLNCDRAFT_57546
Messenger RNA biogenesis [BR:cvr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CHLNCDRAFT_57546
    TREX complex
     CHLNCDRAFT_57546
Spliceosome [BR:cvr03041]
 Complex C
  Other components
   EJC/TREX
    CHLNCDRAFT_57546
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CHLNCDRAFT_57546
SSDB
Motif
Pfam: RRM_1
Other DBs
NCBI-GeneID: 17356299
NCBI-ProteinID: XP_005848763
JGI: ChlNC64A_1_57546
UniProt: E1ZBK8
LinkDB
Position
Unknown
AA seq 242 aa
MAAEAALNKSLDDLIAEQRQKKDTKTQKKEVRRGNKPGGDRPGPGGSRAPKRVSGGGPPP
RREPRNLSITVKGGVGKRVSAGGGVREEREREDPQRREAALEGGAKWGHDMYRGPVGGGG
GGGGARRGPRDPTPLGTKLGRSEGTAEVIFEDAGHAERAMRKYNNVQLDGNAMQIELIPQ
AAPSAGGGAGGPRTLSSGIRISGERGGTRMVQLTRHFQQAAGGATRVRGRGSVRSGVMAM
QE
NT seq 729 nt   +upstreamnt  +downstreamnt
atggccgccgaggctgccttgaacaagagcctggatgacctgattgcggagcagcgccag
aagaaggatacaaagacgcagaagaaggaggtgcgccgcggcaacaagcccggcggcgac
cgccccggccccggcggcagccgcgcgccaaagcgcgtgtcgggcggcgggccgcccccg
cgccgcgagccccgcaacctctccatcacagtcaagggcggcgtgggcaagcgggtgtcc
gccggcggcggcgtgcgtgaggagcgggagcgggaggaccctcagcgccgcgaggcggca
ctggagggcggcgccaagtggggccacgacatgtaccgcggcccggtgggcggcggcggc
ggcggcggcggtgcccggcgcgggccccgcgaccccaccccgctcggcaccaagctcggt
cggtcggaggggacggcggaggtgattttcgaggatgcggggcacgcggagcgcgcgatg
cgcaagtacaacaacgtgcagctggatggcaacgcgatgcagatcgagctgatcccgcag
gcggcgcccagcgcgggcggcggcgccggcggcccccgcaccctcagcagcggcatccgc
atcagcggcgagcgcggcggcacgcgcatggtgcagctgacgcgccacttccagcaggcg
gcgggcggcgccacgcgcgtgcgcggccgcggcagcgtgcgcagcggcgtgatggccatg
caggagtga

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