Cyanothece sp. PCC 7425: Cyan7425_4178
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Entry
Cyan7425_4178 CDS
T00836
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cyn
Cyanothece sp. PCC 7425
Pathway
cyn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cyan7425_4178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyn03400
]
Cyan7425_4178
Enzymes [BR:
cyn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Cyan7425_4178
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Cyan7425_4178
DNA repair and recombination proteins [BR:
cyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Cyan7425_4178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
NFACT_N
DZR
RNHCP
HscB_4_cys
Motif
Other DBs
NCBI-ProteinID:
ACL46491
UniProt:
B8HXE6
LinkDB
All DBs
Position
complement(4230083..4230964)
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AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLEQLTLGRKCLGGDVLLQRTISHPFSVAEFLDGLQGTRIECWQRRGK
YLLADLVDANYPKLRRGWLGVHLRMTGQLLWLESSQPLQKHTRVRLFFADAASSLPWELR
FVDQRTFGQMWWVSPEQRPEQIISGWGKLGPEPFSPDFSVAYLFQQLQQSRRPIKNALLD
QTLVAGIGNIYADEALFCSGIHPLTPCAELRPAQVEKLQGAIISVLQASLAEGGTTFSTF
LNVRGVNGNYGGQALVYDRRGEPCHTCGTAIERIKLAGRSTHFCPQCQISSIT
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaattgcctgaagttgaaacggttcgacgggggcttgagcagctaacccttggc
cgtaaatgtctgggtggggatgtgttactgcaacgaacgatttcccaccccttttctgtt
gcagaatttcttgacggattgcagggaacgcggattgagtgctggcagcggcgaggaaaa
tacctgctagcggatctggtcgatgccaactatccaaagctgagacgaggttggctgggg
gtccatctgcgaatgacgggacagctcctgtggttagagtccagtcaacccctccagaag
cacacccgtgttcgtttattctttgctgatgctgcttcctctcttccctgggaattgcga
tttgtcgatcagcgtacctttgggcagatgtggtgggtgagtccagagcagcggccggaa
cagatcatttctggctggggtaagctcggcccagaaccgtttagcccggatttttccgtt
gcctatttgttccagcaattgcaacagagccgtcgcccgatcaaaaatgcccttttagat
caaaccttagtggcaggcattggcaatatctacgcagatgaggcattgttttgcagtggt
attcatcccctcactccctgtgctgaactgcgacccgctcaagtggaaaaattacagggg
gcgatcatcagtgtcttacaggccagcctggcagagggtggaaccacttttagtacgttt
ctgaatgtcaggggagtaaatggtaattacgggggccaggctctggtctacgatcggcgc
ggggaaccctgtcacacctgtggaacggcgatcgaacgcataaagttggcagggcgctcc
acccacttttgtccgcagtgccagattagctctataacctga
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