Cyanothece sp. PCC 7425: Cyan7425_4503
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Entry
Cyan7425_4503 CDS
T00836
Name
(GenBank) VacB and RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cyn
Cyanothece sp. PCC 7425
Pathway
cyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyan7425_4503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyn03019
]
Cyan7425_4503
03016 Transfer RNA biogenesis [BR:
cyn03016
]
Cyan7425_4503
Enzymes [BR:
cyn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Cyan7425_4503
Messenger RNA biogenesis [BR:
cyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cyan7425_4503
Transfer RNA biogenesis [BR:
cyn03016
]
Prokaryotic type
tRNA degradation factors
Cyan7425_4503
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ACL46813
UniProt:
B8HK63
LinkDB
All DBs
Position
complement(4574756..4577050)
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AA seq
764 aa
AA seq
DB search
MELSIKNLLDNFADDKLVAPKVLEKKMGCEDDPANLHQLQIALDALERVGILVKERGKYR
RVKDENLVEGKLRCSSKGFCFAIQDDDSSEDIYIRESQLSNAWNGDRVLVQVTKEGRRRR
SPEGEVRLILERGNPSVLARVRRLEQGWRGKPLDDRLLFELELLPSEAVTDLELAEEQLV
HVEIVRYPLGQYPPLGKITQILGNDAQSAADTELVCCKYGLNRNFSEAVRTVAASLPSKL
KKTDLKNRLDLRSLLTLAITDELPGSAFVDAAFSLVQTPTGDWQLGVHIADVSHYVTPDS
PLDREASRRGTTICLRGVTLPLLPESPLGFVPDQERLAVSLLVTLNGAGEVLEYELQPSV
IQVDQILNSAQVQAILTPGEASPEMPPAVTEEVTQLARLSQALHQQRFQRGGFEISLAQA
YLHTYDDEGLLPALTVTPAAIAHSLVAEFLLLANQTIISHLQTLGVPAVYRVQSPPELYD
VQELIKLTGNLGIPLSLSQEDTVQPQDYQNFIRQLATSDVAPLLMELLLETLKPASDSAV
SGPHFSLASVQGYGHFTAPLRRYTDILNHRVLHAIFTEGRDRRSSRSKEQVNLRHSSAVG
EISWNVLPPEIQRELESAITLHLPHLQEREKVALQVMKDLDGLMKVKQMQERTGEVFRGL
ITGIQSYGFFVELEELMVEGLVHVSSLRDDWYEYRSRQQTLIGRKNRRQYRLGDRVEVQV
KNVDYYRQQIDLVVVGGGSEATEEDLEEPGVGPETPSNMEAELE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggaactttcaattaagaatctgctggacaactttgccgacgataagttagttgccccc
aaggtgctggaaaaaaagatgggctgcgaggatgatccagctaatctgcatcagttacag
atcgctttagatgctttagagcgggtgggcatcctcgtgaaggagcgaggcaagtatcgg
cgggtgaaggatgaaaacctggtggagggcaagctgcgctgctccagtaaggggttttgt
tttgcgatccaggatgatgacagcagtgaggatatctatatccgggaaagccagttgagt
aatgcctggaatggcgatagagtgctggttcaggttacgaaagaaggccgacggcgacgc
agtcctgaaggagaggtgcggttaattctggagcggggaaatccctctgtgctggctcgg
gtgcgacggcttgagcagggctggcggggcaaacccctggacgatcggctgttgtttgaa
ctggaacttctccccagtgaggcggtgacggatctggaactggcagaggagcaactggtt
cacgttgaaattgtccgctatcccctggggcagtatcctcctctgggcaaaattactcag
attttgggcaacgatgcccaatcggcggcagatacggaactggtttgctgtaagtatggc
ttgaaccgtaatttttctgaggcggtgcgaaccgtagcagccagtttacccagcaaattg
aagaaaaccgatctgaaaaatcggctggatttacgatcgctgctgaccctggccattacc
gacgaactcccgggcagtgcctttgtggatgcggccttcagtctggtgcaaacccccacg
ggtgactggcaattgggagtccatattgcggatgtcagccactacgttactcctgatagt
ccccttgatcgggaagccagtcgccggggcaccacgatttgcctccggggagttactctg
cccctgttgcccgaatctcccctgggatttgtgccggatcaggagcgtctggccgtttcc
ctgctggtaacgctcaatggtgcgggggaagtgctggagtacgaactgcagccctcggtg
atccaggtggatcagatcctgaattcagcccaggtccaggcaattttgacccctggcgag
gcttccccagagatgcccccagcggtgacggaagaggtaacgcaactggctcggctcagt
caagcgctccaccagcaacgttttcagcggggagggtttgaaatttctctggctcaggct
tacctgcatacctacgatgacgaaggcttgcttccggctctgaccgttacccccgccgcg
atcgcccactcgttagtggcagagttcctcttgctggccaaccagactatcatttctcac
ctccagaccttaggggtgccagcagtctaccgggtccaatccccgcctgagctttacgac
gtccaggaattgatcaaactgaccggtaatctgggtattccccttagcctcagtcaagag
gataccgttcagccccaggattaccagaactttatccgccagctggctacctccgatgtg
gcccccctgctgatggaattgttgctggagactctcaagcctgccagcgatagtgccgtt
tctggtccccatttcagtcttgcttcggtacagggctatggccatttcaccgccccactg
cgccgctatacggatattctcaaccaccgggtgctgcatgccatttttactgaaggtcgc
gatcgccgcagtagtcgctctaaggaacaggtgaatttgcgccacagttctgctgttggt
gagatcagctggaatgtcctcccccccgaaatccagcgggagttagaatcggccatcacc
ctccatctgccccatctgcaagagcgggaaaaagtggccctgcaggtgatgaaagacctg
gatgggctgatgaaagtcaaacagatgcaggagcgcaccggggaagtgttccgtggttta
attaccggcattcaatcctacggtttttttgtggaactggaagaattgatggtggaaggt
ctggtgcatgtcagctcgctccgggatgattggtacgaataccgctcccgtcagcaaacc
ctgattggacgtaaaaatcggcgtcagtaccgccttggcgatcgagtggaagttcaggtg
aaaaatgttgattactaccgccagcaaattgatctggtagttgtgggtggggggagtgaa
gccaccgaagaagacctggaggaacccggtgttggtccggaaactccctccaacatggaa
gcagaactggagtag
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