KEGG   Defluviimonas alba: AKL17_3157Help
Entry
AKL17_3157        CDS       T04387                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
daa  Defluviimonas alba
Pathway
daa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:daa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AKL17_3157
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:daa03400]
    AKL17_3157
Enzymes [BR:daa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AKL17_3157
DNA repair and recombination proteins [BR:daa03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AKL17_3157
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AMY70389
UniProt: A0A165SRM4
LinkDB All DBs
Position
complement(3140323..3142761)
Genome map
AA seq 812 aa AA seqDB search
MGLLDTYHGKRDFGQTPEPADPGQSSATALRYSMQKHDATRLHWDLRLEWQGVLLSWAVT
RGPSADPSSKRLAVRTEDHPLSYLTFEGVIPKDNYGAGTVMLWDIGHWQPFHDVADGLAE
GHLHFALHGRRNTGNWSLVRMKGRRAGDKGRETWLMVKDRDAAAEDAQEGLVERHLTSVA
TGRDLAGVAAGAPAVAFGPDRKGAMPRFRAPQLATAVKDLPEGAAWLHEVKHDGYRAQVA
IGRGGARIFTRSGLDWSDRFSPLLPVLAELPAGTALIDGEIVAGAGLQGFAALQAAIQEG
GPFRFYVFDLLHLNGADLAPLPQTERRAALEKLLEDVPARGLVQLSPAIEGEAAPVLAAI
CEAGGEGIISKLAHAPWRGGRSTAWLKVKCSRRAEFVICGYQPSDKRGRAFASLLLATRE
GDTLVYRGKVGTGFDDAAQQEIAERLAALARPKTPLEKVPAEGRGAKWVRPELVAEVVYA
EVTPEGRLRHARFIALREDKPAVEVQMETEIPAGDRTLVRGTPISSPDRVIFPKPKTTKL
DLARYYDAMADRILPTLADRPASLLRLPSGLEGERFFQKHAGKGFPKAIRSLPIEEKDGG
TEQYIYIADAEGLVAAAQMGTVEFHPWGARRDRLDRPERLVFDLDPDEGLGFAAVRRAAF
DLRGKLEELGLGSWPMVSGGKGVHVIVPLRRTAGWDTVKLFAQLFATLLASGQPDRYTAT
MAKAARKGRIFIDWLRNERGATAIAPFSVRARPGAPVAVPVSWDELARLRRANGFGLKAA
QERAWSDLTLPADATLGEPVLARLEALREKQA
NT seq 2439 nt NT seq  +upstreamnt  +downstreamnt
atgggcctgctggacacatatcacggcaagcgcgatttcgggcagacgccggaaccggcc
gaccccggccagtccagtgcgaccgccctgcgctattcgatgcagaagcatgacgcgacc
cgcctgcattgggatctgcggctggaatggcagggcgttctgctgagttgggctgtcacc
cgcggcccctctgccgatccgtccagcaagcggctggcggtgcggacggaggaccacccg
ctgagctacctgaccttcgaaggagtgatcccgaaggacaattacggcgcggggacggta
atgctgtgggatatcggccattggcagcctttccacgatgtggccgacggcctggccgaa
ggccatctgcatttcgcgctgcacggccggcgcaacaccggcaactggtcgctggtgcgg
atgaaggggcggcgggcgggtgacaagggccgcgagacctggctgatggtcaaggaccgc
gatgccgccgccgaagacgcgcaggaggggctggtggagcggcacctgaccagcgttgcc
accgggcgcgatctggcgggggtcgcggccggcgcccccgccgttgcctttgggccagat
cgcaagggcgcgatgccgcggttccgcgcgccgcaattggccaccgcggtgaaggacctg
cccgagggcgcggcctggctgcatgaggtcaagcatgacggctaccgcgcgcaggtggcg
atcggacggggcggcgcgcggatcttcacccgcagcgggctcgactggtccgaccgcttc
tcgccgctgctgccggtgctggccgaactgcccgccgggaccgcgctgatcgacggcgag
atcgtcgcgggtgcggggttgcagggctttgccgcgctgcaggctgccattcaggagggc
gggccgttccgcttctatgtcttcgacctgttgcatctgaatggcgccgaccttgcgccg
ctgccgcaaaccgagcgccgcgctgcgctggagaagttgctggaggacgtgcccgcccgc
ggcctcgtgcaactgtcgccggccatcgagggcgaggccgcgccggtgctggcggcgatc
tgcgaggcgggcggcgaggggatcatctccaaactcgcccatgcgccgtggcgcgggggg
cgatccaccgcctggctgaaggtgaagtgcagccgccgggcagagttcgtgatctgcggc
tatcaacccagcgacaagcggggtcgggcctttgcctcgctgttgctggcgacgcgggaa
ggcgacacactggtctatcgcggcaaggtcggcaccggcttcgacgatgcggcgcaacag
gagatcgcggagcggctggcggcgctggcccggccgaaaaccccgctggagaaggtaccg
gccgaggggcggggcgcgaagtgggttcggcccgaactggtggcagaggtggtctatgcc
gaggtgacacccgaaggccgcctgcgccacgcgcggttcatcgcgctgcgtgaagacaaa
ccggcagtggaggtgcagatggaaaccgaaatccccgcgggcgaccgcacccttgtgcgc
ggcaccccgatcagcagcccggaccgggtgatctttcccaagccgaagacgaccaagctc
gaccttgcccgctactatgacgcgatggcggaccggatcctgccgacgctggcggatcgg
cccgcctcgctgctgcggctgccaagcgggctggagggcgagcggttcttccagaaacac
gcgggcaagggctttccgaaggcgatccgcagcctgcccatcgaggagaaggatggcggg
accgagcaatacatctacatcgccgatgccgaggggctggtggccgcggcgcagatgggc
acggtggagttccacccctggggcgcgcgccgtgaccggctcgaccggcccgaacggctg
gtgttcgatctggaccccgacgaggggttgggatttgccgccgtgcgtcgcgcggcgttc
gatctgcggggcaagctggaggagttggggcttggttcctggccgatggtgtcgggcggc
aagggcgtgcatgtgatcgtgccgctgcgccgtacggcgggctgggacacggtcaagctg
ttcgcgcagctcttcgccacgctgctggcgagcggccagcccgaccgctacaccgcaacg
atggccaaggcggcgcgcaaggggcggatcttcatcgactggctgcgcaacgaacgcggg
gcgacggcgattgcccccttctcggtgcgcgcccgccccggtgcgccggtggcggtgccg
gtcagctgggacgaactggccaggctgcgccgtgcgaacggcttcggcctgaaggcggcg
caggagcgggcatggtcggacctgaccctgcccgccgatgccacgctgggggagccggtg
ctggcccggctggaggcgctgcgtgagaagcaggcctga

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