KEGG   Desulfurivibrio alkaliphilus: DaAHT2_1458
Entry
DaAHT2_1458       CDS       T01244                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
dak  Desulfurivibrio alkaliphilus
Pathway
dak03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dak00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DaAHT2_1458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dak03021]
    DaAHT2_1458
   03400 DNA repair and recombination proteins [BR:dak03400]
    DaAHT2_1458
Enzymes [BR:dak01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DaAHT2_1458
Transcription machinery [BR:dak03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DaAHT2_1458
DNA repair and recombination proteins [BR:dak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DaAHT2_1458
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid DUF5928
Other DBs
NCBI-ProteinID: ADH86153
UniProt: D6Z3M8
LinkDB
Position
complement(1702766..1706872)
AA seq 1368 aa
MFSTCSLGPLNREKGVAVEELFSFFAKPKSPTKFKAVRIATASPEKIRDWSHGEVKKPET
INYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERMG
HIQLAAPVAHIWFLKSLPSKIGNLLDMTLKELEKVLYFDSYVVISSTEPTITPGSLLSEE
DYRQARETFPDKFKVGIGAAAVREMLAAIDLAELSNQLRTEMRETGSEAKRKKLAKRLNV
TEAFLESGNRPEWMILEVIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLL
ELDAPEIIIRNEKRMLQEAVDVLFDNGRRGKVITGPNKRPLKSLSDMLKGKQGRFRQNLL
GKRVDYSGRSVIVVGPHLRLHQCGLPKKMALELFKPFIYNRLEAKGLVTTIKSARKMVEK
GTKEVWDVLDEVVSEYPVILNRAPTLHRLGMQAFEPILVEGKAIQLHPLVCTAFNADFDG
DQMAVHVPLTVEAQMEARVLMMSTNNILSPANGEPIIIPSQDIVLGLYYLTRERFFAKGE
GKCFSSPAEVSLANDFGEVHLQARVKVRVNGELVDTTPGRILVGELLPAGLPFSLVNQNL
GKKQLAKIIDYSYRHAGTKATVILADRLKDMGYEYSTRAAISICLNDMKIPVSKDELLEK
AEAQVLDVDQQYRDGLITPGEKYNKVVDIWSRTTDQVANDMMDEMKIDYLRDKDKKLVEQ
PSFNSIFIMADSGARGSRDQIKQLAGMRGLMAKPSGEIIETPIKANFREGLSVLEYFTST
HGARKGLADTALKTANSGYLTRRLVDVAQDATIVERDCGTLDGIIIEALVEGGEVIQPVG
DRILGRVALDDIVDPFSGDTIVEANGEITEDKVALIDEAGIDRVQIRSVLTCKSQRGVCS
LCYGRDLGRGHMVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGTASRAAEQAEVRSRHGG
KVQFINMHTVRNVAGHLVVMTRNGEVAIIGPQGRERERYHINYGANLYVDEGTEVAPDTQ
IAEWDPYTIPVVSEIGGRVKFGDIIEGVTMQERVDPVTGKASLVITQSRAGQHNPRITLK
DEQNKTAKLPKTGTPARYSLPVGTIIVVKEDDEVQPGTIMGKIPRETTKTKDITGGLPRV
AELFEVRKPKEYAVISEIDGQVSYGKDLKGKKRVVVTPEVGEPKEYLIPKGKHVIVHEGD
YVKAGEPLMDGSPDPNDILRVMGVKELAKFLVNEVQEVYRLQGVKINDKHIEVIVRQMLR
RVHITSVGDSTFMLGEHVEWWRFNQDNEKLLTEGARPATAEPVLLGVTKASLSTDSFISA
ASFQETTKVLTNAAMAGKVDLLNGLKENVIMGRLIPAGTGVERYAIEE
NT seq 4107 nt   +upstreamnt  +downstreamnt
atgttttcgacctgtagcttgggtcctttaaatagagagaaaggtgttgccgtggaagaa
cttttcagctttttcgccaaaccgaaatcaccgaccaaattcaaggctgtccgcatcgcc
accgccagcccggagaagatccgggactggtcccacggcgaggtcaaaaagccggaaacc
atcaactaccggaccttcaagcccgagcgtgacgggctgttctgcgccaaaatatttggc
ccggtcaaggattacgagtgcaactgcggcaagtacaagcggatgaaacaccgcggtgtg
gtctgcgaaaagtgcggggtggaggttatccagtccaaggtgcgccgcgagcggatgggg
catatccagctggcggccccggtggcccacatctggttcttaaaaagcctgcccagcaaa
atcggcaacctgctggatatgaccttaaaggagctggaaaaggttctatactttgactcc
tacgtggtcatcagttccaccgaacccaccatcacccccggcagcctgctcagcgaagaa
gattaccgccaggcccgggagaccttcccggacaagttcaaggtgggcatcggggctgcg
gcggtgcgggagatgctggcggccatcgacctggccgagttgtccaatcagttgcggacc
gagatgcgggaaaccggttccgaggccaagcggaagaagctggccaaacgccttaacgtc
accgaggccttcctggagtccggcaaccggccggagtggatgattctcgaggtgatcccg
gtactgccgcccgatctccggcccctggtgcccctggaaggggggcgttttgccacctcc
gatctcaacgatctttaccgccgggtgatcaaccgcaacaatcgcctgaagcgcttgctg
gagctggatgcgccggagattatcatccgcaacgaaaaacggatgcttcaggaggcggtg
gatgtgctctttgacaacggcaggcggggcaaggtgatcaccggccccaacaagcggccg
ttgaaatcgctctccgacatgctcaagggcaaacagggccgctttcgccagaacctgctg
ggtaaacgggtggattattccggccggagcgttatcgtggtcggtccgcacctgcgcctg
caccagtgcggcctgcccaagaagatggccctggagctcttcaaaccctttatctacaac
cgcctggaggccaaggggctggttaccaccattaaaagcgcccgcaagatggtggaaaag
ggcaccaaagaggtctgggacgtactggatgaggtggtcagcgaatacccggtgattctc
aaccgggcgcccaccctgcaccgtctggggatgcaggcctttgagccgatcctggtggag
ggcaaggccattcaactccatcctctggtctgtaccgccttcaacgccgacttcgacggc
gaccagatggcggtgcatgtgcccctgaccgtggaggcgcagatggaggcccgggtgttg
atgatgtccaccaacaacatcctctcgccggccaacggtgagcccatcattattccctcc
caggatattgtgctggggctttactatctcacccgggagcgttttttcgccaaaggtgaa
ggtaaatgcttcagctcgccggcggaggtcagtctggctaacgacttcggcgaggtgcac
ctgcaggcccgggtcaaggtgcgggtcaacggggagctggttgataccacgcccggccgc
attctggtgggtgagctgctgcccgccgggctgcccttttctctggtcaaccagaacctg
ggcaagaagcagctggccaaaatcatcgactactcttatcgccacgccggcaccaaggcc
acggtaattttggccgaccggctcaaagacatgggttatgagtactccacccgggcggcg
atctcgatttgcctcaacgacatgaagatcccggtgagcaaggacgagctgctggaaaag
gccgaagcccaggtgctggacgtcgaccagcagtaccgcgacggtctcattacccccggc
gaaaagtacaacaaggtagtagatatctggtcccggaccaccgaccaggtggccaacgac
atgatggacgagatgaagatcgactacctgcgggacaaagacaaaaaactggtggagcag
cccagcttcaactccatcttcatcatggccgactccggcgcccggggcagccgcgaccag
atcaaacagttggccggcatgcggggcctgatggccaagccttccggcgagatcatcgaa
acccccatcaaggccaacttccgggaaggcttgagcgtgctggagtactttacctccacc
cacggcgcccgcaagggtctggccgacaccgccctgaaaaccgccaactcggggtatctt
acccgccgcctggtggatgtcgcccaagatgccaccattgtcgagcgtgactgcggcacc
ctggacggtatcatcatcgaggccctggtggagggcggcgaggtgattcagccggtgggc
gatcgcatcctgggccgggtggccttggacgatattgtcgatcccttcagcggcgacacc
atcgtcgaggccaacggcgaaatcaccgaagataaggtggccttgatcgatgaggccggc
atcgaccgggtacagatccgctcggtgctgacctgcaagtcccagcgtggcgtctgcagc
ctctgctacggccgtgatctgggccgcggccatatggtcaatatcggggaggcggtggga
atcattgccgcccagtccattggcgagccgggtacccagttgaccatgcggaccttccat
atcggtggtaccgccagccgggccgccgagcaggccgaggtgcgcagccgccacggcggt
aaggtgcagttcatcaatatgcatacggtgcgcaacgtcgccgggcatctggtggtcatg
acccgcaacggtgaagtggcaatcatcggcccccagggccgggagcgggagcgctaccat
atcaactacggcgccaatctttacgtggatgaaggtacggaagtggcacccgatacccag
attgccgaatgggatccctacaccattccggtggtcagcgagatcggtggccgggtcaag
ttcggtgacatcatcgaaggtgtgaccatgcaggaacgggtggacccggttaccggtaag
gccagcctggtgattacccagtcccgggccggccagcataacccccggattaccttgaag
gatgagcagaataaaaccgccaagctacccaagaccgggacccccgcccgctattccctg
ccggtgggtaccatcatcgtggttaaggaagatgatgaggtgcaacccggtaccatcatg
ggtaaaattccccgggaaaccaccaaaaccaaggacatcaccggtggtctgccccgggtg
gccgagctttttgaggtgcgcaagcccaaggagtacgcggtcatcagcgagatcgacggc
caggtcagctacggcaaggatctgaagggcaaaaaacgggtggtcgtcaccccggaagtg
ggtgagcccaaggagtacctgatccccaaaggcaagcacgtcatcgtccacgagggtgat
tacgtcaaggccggtgaaccgctgatggacggctcccccgatcccaacgacatcctccgg
gtgatgggggtcaaggaactggccaagttcctggtcaacgaggtccaggaggtttatcgt
ctgcagggggttaagatcaacgataagcacatcgaggttatcgtccgccagatgttgcgg
cgggtacatataaccagcgtgggagactccacctttatgctcggcgaacatgttgagtgg
tggcgttttaaccaggataacgaaaaactgctgaccgaaggcgcccgcccggccacggcc
gagccggttctgctgggagtcaccaaggcatccctgtccaccgacagctttatctcggcg
gcctcgttccaggagaccaccaaggtattgaccaatgcggccatggccggcaaggtcgat
ctccttaacggcttgaaggagaacgttatcatgggccgccttatcccggccgggaccggc
gtcgagcgctacgccatcgaagagtaa

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