Desulfurivibrio alkaliphilus: DaAHT2_1458
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Entry
DaAHT2_1458 CDS
T01244
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dak
Desulfurivibrio alkaliphilus
Pathway
dak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DaAHT2_1458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dak03021
]
DaAHT2_1458
03400 DNA repair and recombination proteins [BR:
dak03400
]
DaAHT2_1458
Enzymes [BR:
dak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DaAHT2_1458
Transcription machinery [BR:
dak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DaAHT2_1458
DNA repair and recombination proteins [BR:
dak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DaAHT2_1458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
DUF5928
Motif
Other DBs
NCBI-ProteinID:
ADH86153
UniProt:
D6Z3M8
LinkDB
All DBs
Position
complement(1702766..1706872)
Genome browser
AA seq
1368 aa
AA seq
DB search
MFSTCSLGPLNREKGVAVEELFSFFAKPKSPTKFKAVRIATASPEKIRDWSHGEVKKPET
INYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERMG
HIQLAAPVAHIWFLKSLPSKIGNLLDMTLKELEKVLYFDSYVVISSTEPTITPGSLLSEE
DYRQARETFPDKFKVGIGAAAVREMLAAIDLAELSNQLRTEMRETGSEAKRKKLAKRLNV
TEAFLESGNRPEWMILEVIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLL
ELDAPEIIIRNEKRMLQEAVDVLFDNGRRGKVITGPNKRPLKSLSDMLKGKQGRFRQNLL
GKRVDYSGRSVIVVGPHLRLHQCGLPKKMALELFKPFIYNRLEAKGLVTTIKSARKMVEK
GTKEVWDVLDEVVSEYPVILNRAPTLHRLGMQAFEPILVEGKAIQLHPLVCTAFNADFDG
DQMAVHVPLTVEAQMEARVLMMSTNNILSPANGEPIIIPSQDIVLGLYYLTRERFFAKGE
GKCFSSPAEVSLANDFGEVHLQARVKVRVNGELVDTTPGRILVGELLPAGLPFSLVNQNL
GKKQLAKIIDYSYRHAGTKATVILADRLKDMGYEYSTRAAISICLNDMKIPVSKDELLEK
AEAQVLDVDQQYRDGLITPGEKYNKVVDIWSRTTDQVANDMMDEMKIDYLRDKDKKLVEQ
PSFNSIFIMADSGARGSRDQIKQLAGMRGLMAKPSGEIIETPIKANFREGLSVLEYFTST
HGARKGLADTALKTANSGYLTRRLVDVAQDATIVERDCGTLDGIIIEALVEGGEVIQPVG
DRILGRVALDDIVDPFSGDTIVEANGEITEDKVALIDEAGIDRVQIRSVLTCKSQRGVCS
LCYGRDLGRGHMVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGTASRAAEQAEVRSRHGG
KVQFINMHTVRNVAGHLVVMTRNGEVAIIGPQGRERERYHINYGANLYVDEGTEVAPDTQ
IAEWDPYTIPVVSEIGGRVKFGDIIEGVTMQERVDPVTGKASLVITQSRAGQHNPRITLK
DEQNKTAKLPKTGTPARYSLPVGTIIVVKEDDEVQPGTIMGKIPRETTKTKDITGGLPRV
AELFEVRKPKEYAVISEIDGQVSYGKDLKGKKRVVVTPEVGEPKEYLIPKGKHVIVHEGD
YVKAGEPLMDGSPDPNDILRVMGVKELAKFLVNEVQEVYRLQGVKINDKHIEVIVRQMLR
RVHITSVGDSTFMLGEHVEWWRFNQDNEKLLTEGARPATAEPVLLGVTKASLSTDSFISA
ASFQETTKVLTNAAMAGKVDLLNGLKENVIMGRLIPAGTGVERYAIEE
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgacctgtagcttgggtcctttaaatagagagaaaggtgttgccgtggaagaa
cttttcagctttttcgccaaaccgaaatcaccgaccaaattcaaggctgtccgcatcgcc
accgccagcccggagaagatccgggactggtcccacggcgaggtcaaaaagccggaaacc
atcaactaccggaccttcaagcccgagcgtgacgggctgttctgcgccaaaatatttggc
ccggtcaaggattacgagtgcaactgcggcaagtacaagcggatgaaacaccgcggtgtg
gtctgcgaaaagtgcggggtggaggttatccagtccaaggtgcgccgcgagcggatgggg
catatccagctggcggccccggtggcccacatctggttcttaaaaagcctgcccagcaaa
atcggcaacctgctggatatgaccttaaaggagctggaaaaggttctatactttgactcc
tacgtggtcatcagttccaccgaacccaccatcacccccggcagcctgctcagcgaagaa
gattaccgccaggcccgggagaccttcccggacaagttcaaggtgggcatcggggctgcg
gcggtgcgggagatgctggcggccatcgacctggccgagttgtccaatcagttgcggacc
gagatgcgggaaaccggttccgaggccaagcggaagaagctggccaaacgccttaacgtc
accgaggccttcctggagtccggcaaccggccggagtggatgattctcgaggtgatcccg
gtactgccgcccgatctccggcccctggtgcccctggaaggggggcgttttgccacctcc
gatctcaacgatctttaccgccgggtgatcaaccgcaacaatcgcctgaagcgcttgctg
gagctggatgcgccggagattatcatccgcaacgaaaaacggatgcttcaggaggcggtg
gatgtgctctttgacaacggcaggcggggcaaggtgatcaccggccccaacaagcggccg
ttgaaatcgctctccgacatgctcaagggcaaacagggccgctttcgccagaacctgctg
ggtaaacgggtggattattccggccggagcgttatcgtggtcggtccgcacctgcgcctg
caccagtgcggcctgcccaagaagatggccctggagctcttcaaaccctttatctacaac
cgcctggaggccaaggggctggttaccaccattaaaagcgcccgcaagatggtggaaaag
ggcaccaaagaggtctgggacgtactggatgaggtggtcagcgaatacccggtgattctc
aaccgggcgcccaccctgcaccgtctggggatgcaggcctttgagccgatcctggtggag
ggcaaggccattcaactccatcctctggtctgtaccgccttcaacgccgacttcgacggc
gaccagatggcggtgcatgtgcccctgaccgtggaggcgcagatggaggcccgggtgttg
atgatgtccaccaacaacatcctctcgccggccaacggtgagcccatcattattccctcc
caggatattgtgctggggctttactatctcacccgggagcgttttttcgccaaaggtgaa
ggtaaatgcttcagctcgccggcggaggtcagtctggctaacgacttcggcgaggtgcac
ctgcaggcccgggtcaaggtgcgggtcaacggggagctggttgataccacgcccggccgc
attctggtgggtgagctgctgcccgccgggctgcccttttctctggtcaaccagaacctg
ggcaagaagcagctggccaaaatcatcgactactcttatcgccacgccggcaccaaggcc
acggtaattttggccgaccggctcaaagacatgggttatgagtactccacccgggcggcg
atctcgatttgcctcaacgacatgaagatcccggtgagcaaggacgagctgctggaaaag
gccgaagcccaggtgctggacgtcgaccagcagtaccgcgacggtctcattacccccggc
gaaaagtacaacaaggtagtagatatctggtcccggaccaccgaccaggtggccaacgac
atgatggacgagatgaagatcgactacctgcgggacaaagacaaaaaactggtggagcag
cccagcttcaactccatcttcatcatggccgactccggcgcccggggcagccgcgaccag
atcaaacagttggccggcatgcggggcctgatggccaagccttccggcgagatcatcgaa
acccccatcaaggccaacttccgggaaggcttgagcgtgctggagtactttacctccacc
cacggcgcccgcaagggtctggccgacaccgccctgaaaaccgccaactcggggtatctt
acccgccgcctggtggatgtcgcccaagatgccaccattgtcgagcgtgactgcggcacc
ctggacggtatcatcatcgaggccctggtggagggcggcgaggtgattcagccggtgggc
gatcgcatcctgggccgggtggccttggacgatattgtcgatcccttcagcggcgacacc
atcgtcgaggccaacggcgaaatcaccgaagataaggtggccttgatcgatgaggccggc
atcgaccgggtacagatccgctcggtgctgacctgcaagtcccagcgtggcgtctgcagc
ctctgctacggccgtgatctgggccgcggccatatggtcaatatcggggaggcggtggga
atcattgccgcccagtccattggcgagccgggtacccagttgaccatgcggaccttccat
atcggtggtaccgccagccgggccgccgagcaggccgaggtgcgcagccgccacggcggt
aaggtgcagttcatcaatatgcatacggtgcgcaacgtcgccgggcatctggtggtcatg
acccgcaacggtgaagtggcaatcatcggcccccagggccgggagcgggagcgctaccat
atcaactacggcgccaatctttacgtggatgaaggtacggaagtggcacccgatacccag
attgccgaatgggatccctacaccattccggtggtcagcgagatcggtggccgggtcaag
ttcggtgacatcatcgaaggtgtgaccatgcaggaacgggtggacccggttaccggtaag
gccagcctggtgattacccagtcccgggccggccagcataacccccggattaccttgaag
gatgagcagaataaaaccgccaagctacccaagaccgggacccccgcccgctattccctg
ccggtgggtaccatcatcgtggttaaggaagatgatgaggtgcaacccggtaccatcatg
ggtaaaattccccgggaaaccaccaaaaccaaggacatcaccggtggtctgccccgggtg
gccgagctttttgaggtgcgcaagcccaaggagtacgcggtcatcagcgagatcgacggc
caggtcagctacggcaaggatctgaagggcaaaaaacgggtggtcgtcaccccggaagtg
ggtgagcccaaggagtacctgatccccaaaggcaagcacgtcatcgtccacgagggtgat
tacgtcaaggccggtgaaccgctgatggacggctcccccgatcccaacgacatcctccgg
gtgatgggggtcaaggaactggccaagttcctggtcaacgaggtccaggaggtttatcgt
ctgcagggggttaagatcaacgataagcacatcgaggttatcgtccgccagatgttgcgg
cgggtacatataaccagcgtgggagactccacctttatgctcggcgaacatgttgagtgg
tggcgttttaaccaggataacgaaaaactgctgaccgaaggcgcccgcccggccacggcc
gagccggttctgctgggagtcaccaaggcatccctgtccaccgacagctttatctcggcg
gcctcgttccaggagaccaccaaggtattgaccaatgcggccatggccggcaaggtcgat
ctccttaacggcttgaaggagaacgttatcatgggccgccttatcccggccgggaccggc
gtcgagcgctacgccatcgaagagtaa
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