Desulfatibacillum aliphaticivorans: Dalk_2316
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Entry
Dalk_2316 CDS
T00813
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dal
Desulfatibacillum aliphaticivorans
Pathway
dal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dalk_2316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dal03019
]
Dalk_2316
Enzymes [BR:
dal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dalk_2316
Messenger RNA biogenesis [BR:
dal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dalk_2316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACL04009
UniProt:
B8FIL9
LinkDB
All DBs
Position
complement(3045532..3047001)
Genome browser
AA seq
489 aa
AA seq
DB search
MTQDSEIDQTEERAAGPRFLTNTKFADFDLPETLLEGLKDAGFERCTPIQAQVLPVALSG
KDIAGQAQTGTGKTAAFLVPMFSKLLGLENRSKTLPSALIVAPTRELALQIYEEAEVLGG
HTDFTIAQAIGGMDYRKQMDILKQGADILIGTPGRIIDYYKQGIFKTHAIKSVVIDEADR
LLDLGFAKDMRYILRKMPHYEKRQSMLFSATLSYRVLELTYDYMNLPEFISVTPEEVTVK
GIDQILYHVGQDQKLPLLLGVFKNEDWTRALVFVNTKSGVEFVAHKLRGNGFPAGGITGD
LPQRKRLQLMERFKNGELSILVATDVASRGIHVEDVSHVINYDLPQDPENYVHRIGRTAR
AGKTGKAISLACEHYVFHLEPMEEMIGLSLPVEWPEEEYFQEDKAGPMPARKRGPKPDQG
QGRGKGRGGKRGGKPGGGPRRRKPRKEGGSPSPENAPVQADGEAPKKKPRRRRRRKKKPA
ASPPSENQS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggattctgaaatcgatcagactgaagaaagggcggcgggaccgcgcttcctc
acaaacaccaaatttgcggactttgaccttccggaaacattgctggaaggcctgaaggac
gccggctttgagcgctgtacgcctatccaggcccaggttctgcctgtggctctttccggc
aaagacatcgccgggcaggctcagaccggcacgggaaagaccgccgcttttcttgtcccc
atgttttccaaacttttagggctggaaaatcggagtaaaaccctgccctccgcccttatt
gtggcccccaccagggagttggccctgcagatatacgaagaagccgaagtcttgggcggg
cacacggatttcaccatcgcccaggccatcggcggcatggattatcgcaagcagatggac
atcctcaagcagggcgccgacattctcatcggcacgccgggccgcattatcgactattac
aagcaaggcatcttcaagactcacgcaatcaaatccgtggtgatcgacgaggcggacagg
cttctggatttgggctttgcaaaggacatgcgctacatcctgcgcaaaatgccccattac
gaaaagcgccagtccatgcttttttccgccactctgtcctacagggttttggaactgacc
tacgactatatgaaccttcccgagttcatatcagtcacgcccgaagaagtgacggtcaag
ggaatcgaccagattttgtaccatgtgggccaggatcagaagctccccttgcttcttggc
gtttttaaaaacgaggattggacccgggccctggtttttgtaaacaccaagtccggcgtg
gagtttgtggcccataaattgaggggaaacgggttcccggccggcggcattaccggagac
ctcccccagcgcaaacgattgcaattgatggagcgcttcaagaacggggagctttccatt
ctggtggctacggatgtggcgtcccgcggcatccacgtggaggacgtcagccatgtcatt
aattacgacctgccccaggacccggaaaactacgtccatcgaataggccgtacggccagg
gcgggcaagacgggcaaggcaatctccctggcatgcgagcattacgtgttccacctggag
cccatggaggaaatgatcggcttatcccttcctgtggaatggccggaggaagagtacttt
caggaagacaaagccggacccatgccggccagaaaacgcggccccaagccggaccagggc
caaggcaggggcaaaggccggggaggaaagcgcggcggaaagccagggggaggaccccgg
cggaggaagccccgcaaggaaggcggaagcccaagccccgaaaacgcccccgtccaggcc
gatggagaagccccgaaaaagaaacccaggagaaggcgccgcagaaaaaagaagcccgcc
gcctccccgccgtccgaaaaccagtcctga
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