Dechloromonas aromatica: Daro_0878
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Entry
Daro_0878 CDS
T00259
Name
(GenBank) Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dar
Dechloromonas aromatica
Pathway
dar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Daro_0878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dar03019
]
Daro_0878
Enzymes [BR:
dar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Daro_0878
Messenger RNA biogenesis [BR:
dar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Daro_0878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
DUF829
Motif
Other DBs
NCBI-ProteinID:
AAZ45634
UniProt:
Q47HP7
LinkDB
All DBs
Position
950826..952103
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AA seq
425 aa
AA seq
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MHFSDLGLKAELLRAVADQGYDTPTPIQQQAIPAVMTGRDLMATAQTGTGKTAGFTLPIL
HRLCSGPNDRLTRVAKTPRVLVLTPTRELAIQVEESVRTYGKHLPITSLAVFGGVGINPQ
IANLRRGVDILVATPGRLLDHVQQRTVDLSKIEIFVLDEADRMLDMGFIRDIRKIIALLP
KQRQNLMFSATFSPDIRELAAGLLHNPASVDVAARNTAAETVTQRVIETNRDQKKELLCH
LFETRGWHQVLVFARTKHGADALSKTLEKAGIKSAAIHGDKSQGARTRALTEFKEGKLVA
LVATDIAARGIDIDALPYVINYELPNVAEDYVHRIGRTGRAGMEGEAISLVSHDERGSLR
DIERLIKRDLERVVIPGFEPSAIAPPKPVQPPRGARKPQPGRPSAQKTAQKPGGPAQHRS
GSRHR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgcatttttccgatctcggcctgaaggccgaactcctgcgcgccgttgccgatcaaggc
tacgatacgccgacccccatccagcagcaggccattcctgccgtcatgaccggccgcgac
ctgatggccacggcccagaccggcaccggcaagacagccggcttcaccctgcccatcctg
caccgcctgtgcagcggcccgaacgaccgcctgacccgcgttgccaagacgccgcgcgtg
ctggtcctgacaccgacgcgtgaactggccatccaggtcgaggaaagcgtgcgcacttac
ggcaagcatctgccgatcacttcactggccgtctttggcggcgttggtatcaatccgcag
atcgccaacctgcgccgtggggtcgatattctggtggcgacgccggggcgtttgctcgat
catgtccagcaacgcaccgttgatctgtccaagatcgagattttcgtcctcgatgaagcc
gaccgcatgctcgacatgggcttcatccgcgacatccgcaagatcatcgccctattgccg
aaacagcgccagaacctgatgttctcggccaccttctcgccggatattcgcgaactggct
gccggactgctgcacaatccggcctcggtcgatgttgcggcgcgcaataccgccgccgaa
acggtcacccagcgcgtcatcgaaaccaatcgcgatcagaaaaaagagctgctctgtcac
cttttcgaaacgcgcggctggcatcaggtgctggtttttgcccggaccaagcatggtgcc
gatgcgttgtccaagacgctggaaaaagccggtatcaagtcggctgccattcacggcgac
aagtcgcagggcgcccggacccgtgccctgaccgaattcaaggaaggcaagctggttgct
ctggtggccactgacatcgcggcacgtggcatcgatattgacgcgctgccctatgtcatc
aactacgaactgcccaatgttgccgaagactacgtgcaccgcatcggtcgtaccggccgg
gccgggatggaaggcgaggcaatttcgctggtctcccacgatgagcgcggtagcctgcgc
gacatcgaaaggctgatcaagcgggatcttgagcgcgttgtcattccgggttttgagcca
tcggccattgcaccgccgaagccggttcagccgccgcgtggcgcgcgcaagccgcaacca
ggtcggccatccgcgcagaaaacggcccaaaagccgggtggtccggcgcaacatcgcagc
ggcagccggcatcgctga
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