Desulforapulum autotrophicum: HRM2_35040
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Entry
HRM2_35040 CDS
T00861
Symbol
alkA
Name
(GenBank) AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
dat
Desulforapulum autotrophicum
Pathway
dat03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HRM2_35040 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dat03000
]
HRM2_35040 (alkA)
03400 DNA repair and recombination proteins [BR:
dat03400
]
HRM2_35040 (alkA)
Enzymes [BR:
dat01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
HRM2_35040 (alkA)
Transcription factors [BR:
dat03000
]
Prokaryotic type
Helix-turn-helix
AraC family
HRM2_35040 (alkA)
DNA repair and recombination proteins [BR:
dat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HRM2_35040 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
ACN16575
UniProt:
C0Q970
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All DBs
Position
3965671..3966732
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AA seq
353 aa
AA seq
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MCRRSRLPGTTEPFLQKKLLLFSDKPVTDIAFASGYGSIRQFNQGFKEIFGITPSAIKKE
RDNSEDGNTTLLLPYARPLDFSQVIEFMKFRAIQGVEDIEDQRYSRTFRTNRSKGYFIVR
DNPGKSAIELTIYCDDIRCYMEIYNRVRLMFDLNTDFFPINKKFIKDKLLSKGMSDGHVP
RLPIAFNSFEFCIRAVLGQQISVQAASTLASRIAKKAGPQTEKNFPPGLDYFFPGPEELV
KTSLEGIGITGVRQATITNIAQGLLDNVFSLNPNQPFETFQKDFSAIRGIGEWTVNYVAM
RSLGMVDSFPAADLGIIKALEKNGKRPGRKEILKQAEKWRPYRAYAALCLWNQ
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
gtgtgccgccggtcaagattgccaggtaccaccgagccctttttgcaaaaaaaattgctc
ctgttttcagacaagcccgttaccgacatcgcttttgcctcgggatacggctccatccgt
cagttcaaccagggtttcaaagaaatttttggtattacgccgtcggcgataaaaaaggaa
agggacaattccgaagacggaaacactaccttgctgctgccctatgccagaccgttagat
ttttcccaagtgattgaattcatgaaatttagagccatacagggcgtggaagacattgaa
gatcaaagatattccaggacgttcagaacaaatcggtcaaaaggatacttcatcgtcagg
gataaccccggaaaatcagcgattgaactgaccatttactgtgatgatatccggtgctat
atggaaatctacaaccgggtccgcctgatgttcgacctgaataccgattttttccccatc
aataaaaaattcataaaggacaagctcctgtccaaagggatgtctgacggtcatgtcccc
cggctgcccattgcctttaattcatttgaattttgtatccgagctgttctgggccaacag
atttcagtacaagccgcttccacactggcctcacgcattgcaaaaaaagcaggacctcag
acggaaaaaaatttcccccctggattagactattttttcccgggtcccgaggaattggta
aaaaccagtttggagggcatcggcatcaccggtgtcaggcaggccaccatcaccaatatt
gcccagggactgctggacaatgtattttccctgaaccccaaccagccctttgagactttt
caaaaggatttttctgccatccggggaattggggaatggacagtgaattacgtggccatg
aggagtctgggtatggtggatagttttcctgccgcagaccttgggatcatcaaggccctg
gaaaaaaacggcaaacgacccgggagaaaagagatattgaaacaggcggaaaaatggcgg
ccttacagggcatatgccgccctctgtctttggaaccaataa
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