Desulfoglaeba alkanexedens: FDQ92_08865
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Entry
FDQ92_08865 CDS
T05964
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dax
Desulfoglaeba alkanexedens
Pathway
dax03030
DNA replication
dax03410
Base excision repair
dax03420
Nucleotide excision repair
dax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FDQ92_08865 (ligA)
03410 Base excision repair
FDQ92_08865 (ligA)
03420 Nucleotide excision repair
FDQ92_08865 (ligA)
03430 Mismatch repair
FDQ92_08865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dax03032
]
FDQ92_08865 (ligA)
03400 DNA repair and recombination proteins [BR:
dax03400
]
FDQ92_08865 (ligA)
Enzymes [BR:
dax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FDQ92_08865 (ligA)
DNA replication proteins [BR:
dax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FDQ92_08865 (ligA)
DNA repair and recombination proteins [BR:
dax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FDQ92_08865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FDQ92_08865 (ligA)
MMR (mismatch excision repair)
DNA ligase
FDQ92_08865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FDQ92_08865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
UPF0758_N
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
QCQ22261
UniProt:
A0A4V1ERN5
LinkDB
All DBs
Position
1954771..1956807
Genome browser
AA seq
678 aa
AA seq
DB search
MEDKAAVRERIEELKRQIRYHDYRYYALDSPEISDAEYDRLFRELVELEEAHPEFADPDS
PTRRVGFPPLEAFPTFEHRVPMLSLENAMSESELREFDRRVRKLLEHAGPVEYVAEPKMD
GLAVEVVYVDGVLSSAGTRGDGYHGEDVTPNVKTIRAVPLRLFTAGGGPSLPEYLTVRGE
VYMDRADFERLNREREAAGEPLFANPRNAAAGSLRQLDSSITAKRPLKVFFYGVGLVEGA
TFETQWEILETLRSWGLPVNPLSRVCKGAEDVVAFFNEIESERPRLPYEVDGVVAKVNRI
DWQRKIGEKSRSPRWAIAYKFSPHQGRSRVLDIVVQVGRTGVLTPVAVLEPISVGGVVIR
RATLHNQDEIERKDIRVGDEVVVQRAGDVIPEVVRVVTEKRTGKEKPFRMVSRCPSCGGE
VVRLPGEAVHRCLNRNCPAQIKASLRHFAGRSAMDIEGLGKEIISLLVDRGLVASPADLY
EIRPEHLKDLPGFAEKSATNLVQAIERSKDVSLAAFIHALGIPHVGEYLAQVLADHFGSI
EALQNATAEELEAISGVGEKVASSILNYFHNPENRRLVQRLREVGVRPRVDRETKPAAPA
DSFWKDLSVVFTGTLSSMTREEAKKRVVALGARVVENVSKKTDVVVVGSDPGSKLEKARA
LGVRIMDEAEFLARVGAE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaaggcggccgtaagggaacgcatcgaagaactgaagcggcagatccggtat
cacgactaccgctactatgcgctcgacagccccgaaatcagcgacgccgaatacgatcga
ctattccgtgaactggtggaactggaagaggcgcacccggagtttgccgatccggattcg
cccacccgccgggtcggattcccaccgcttgaagcctttccaacctttgaacatcgggtt
cccatgctcagcctggaaaatgccatgagcgaatcggaactcagggaattcgaccgcagg
gtgcgcaaactcctggaacatgcggggcccgtggaatacgtcgccgaacccaagatggac
gggctcgcggtggaagtggtctacgtggacggggtgctttcgagcgccgggactcgtgga
gacggctaccatggcgaagacgtgacacccaatgtcaagaccatccgggcggtcccgctt
cggctcttcaccgcgggcggcgggccgtcccttccggagtacctcacggttcggggtgaa
gtgtacatggaccgggccgatttcgagcgcctcaaccgtgaacgggaagcggcgggggaa
cctcttttcgccaatcccagaaacgccgccgccgggtcactccgccagctcgactcgtcc
atcaccgccaaacgccccctcaaggtattcttctacggcgtgggacttgtggaaggagcg
acctttgaaacccaatgggaaatcctcgaaacgcttcggagttgggggcttccggtcaat
ccgctgtccagggtctgtaaaggggcggaagacgttgtggcgtttttcaacgagattgaa
agcgaacgcccccggctgccctatgaagtggacggcgtggtcgccaaggtgaaccgcatc
gactggcagcggaagattggtgagaagagccggagtccgcgctgggccattgcgtacaag
ttttcgcctcaccaggggcgcagccgggtcctcgatatcgtcgtgcaggtggggcgaacg
ggtgtgctcacgcccgtggcggtcctggaacccatttccgtggggggcgtcgtcatccga
agagccacgctgcacaaccaggacgagatcgagcgcaaggatatccgggtgggggacgaa
gtggtcgttcaaagggccggagacgttattccggaggtggtgcgggtcgtgacggaaaag
cgtaccgggaaagagaaaccgttccgcatggtgtcccggtgcccgtcctgcggaggcgaa
gtggtgcggcttcccggagaagccgtccaccgctgcctcaaccggaactgccccgcccag
atcaaggcgagtctccgccacttcgccggacgttcggccatggacatcgaaggactcgga
aaagagatcatttcgctattggtggaccggggcctggtggcttcacccgccgacctctac
gaaatccggccggaacatctcaaggatcttcccggtttcgccgaaaaatcggccacgaac
ctggtgcaggccatcgagcggagcaaggacgtttctcttgccgccttcattcacgccctg
ggaattcctcatgtgggcgagtacctggcgcaggtcctggcggaccacttcggttccatc
gaggctcttcagaacgcgaccgctgaagaactggaggcgatttccggcgtaggcgagaag
gtggcttccagtatcttgaactactttcacaatcccgaaaaccggcgactcgtgcagcgc
ctccgggaagtcggcgtccggcctcgggtggatcgagaaaccaagcccgcggcccccgcc
gattctttctggaaggacctgtcggtggtgttcaccggaacgctttcgtccatgacgcgt
gaagaggccaaaaagcgcgtcgtcgccctgggagcccgggttgttgagaatgtcagcaag
aagaccgatgtagtggttgtgggatccgacccggggtcgaagctggaaaaggcacgggcc
ctcggtgtgcgcatcatggacgaagccgagttcctggcccgtgtgggggccgagtag
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