Desulfomicrobium baculatum: Dbac_3140
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Entry
Dbac_3140 CDS
T00963
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dba
Desulfomicrobium baculatum
Pathway
dba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dbac_3140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dba03019
]
Dbac_3140
Enzymes [BR:
dba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dbac_3140
Messenger RNA biogenesis [BR:
dba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dbac_3140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACU91215
UniProt:
C7LX05
LinkDB
All DBs
Position
complement(3553757..3555184)
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AA seq
475 aa
AA seq
DB search
MTFDSFGLPPTLVQALQTRQLDTPLPVQEAALPVLMAGKSAMLVSRTGSGKTLAYLLPIL
AGINAESMHVQAVVLAPTHELAMQINRVATDLAKDAGLGVRVQALIGGAAVSRQIEGLKK
KPHLVIGSAGRMTHLMELGKLKLKETVWLVLDEADRLLIEEGLEHIRKITGQLGPETRYV
FVSATEGPATTRIARGLAPNLAFVRAQNEISPAIRHCYLVCEERDKVDWLRKVLRGLAPE
RALVFVHRGASAERMAERLEHHQLSVADLHGAHDKFQRQDALDDFRKGKAQTLIASDIAA
RGLDIFGVELVVNVDVPSQSRDYLHRAGRTGRAGATGLVLSLMTEAESRLAKRYAQDLDI
ALEQVQLVRGALVPATGDSAQNLRPAPRPFGPGRGGRKPPLATGPDARKEPTTTASTPPA
PARSPQSRDKAAPARKRGSALPGANPDTNSRAKTGPKTGKAGQKPMSGPKRNKPA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgactctttcggactcccgcccaccctggtgcaggccctgcagacccgtcaa
ctcgatacgcccctgcccgtgcaggaggcggcgctgccggtgctgatggccggaaaatcg
gccatgctggtctcacggaccggctcgggcaagacgctcgcctacctcctgcccattctg
gcgggcatcaatgccgagagcatgcacgtgcaggccgtggttctggccccgacccacgaa
ctggccatgcaaattaatcgcgtggccacggacctggccaaagacgccggtcttggcgta
cgcgtgcaggcccttatcggcggagccgcggtcagccgccagatcgagggactcaagaaa
aaaccccatctggtcatcggatcggccggccgcatgacgcacctcatggagcttgggaaa
ctcaaactcaaggagaccgtgtggctggtcctcgacgaagcggaccgcctgctcatcgag
gaagggcttgagcatatccgcaagatcacgggccagctgggtcccgagacccgctatgtc
ttcgtctccgccactgaaggtccggccacgacccgcatcgctcgtggactagccccgaac
cttgcgttcgtgcgtgcgcaaaacgagatcagcccggccatccggcactgctacctggtc
tgtgaggaacgcgacaaagtcgattggctgcgcaaggtgctgcgcggccttgcccccgag
cgggccctggtcttcgtgcaccgcggggccagcgccgagcgcatggccgaacgcctggaa
caccatcagctgtccgtggccgacctgcacggcgcgcacgacaagttccagcgccaggac
gccctggatgatttccgcaaaggcaaggcccagacgctcatcgcttcggacatcgcagcc
cggggactcgatatctttggagtggaactggtggtcaacgtggacgtgccaagccagagc
cgcgattatctgcaccgtgccggacgcacgggccgagccggggccaccggccttgtgctg
tctctcatgaccgaggcggaaagccgcctggccaagcgctatgcccaggatctggacatc
gccctggagcaggtgcagctcgtgcgcggagcccttgtgccggcgacaggcgactctgcg
cagaacctgcgtccggccccgcgtccttttggccctggcagaggcggcagaaagcccccc
ctcgcgaccggacccgacgcccgcaaggagcccacgacaaccgcctccaccccgcccgct
cccgccaggtcccctcaatcccgggacaaggccgctccggcacgcaaacgcggctccgcg
ctcccaggtgccaatcccgacaccaactcccgcgccaaaactggccccaaaaccggcaag
gccggacaaaaacccatgtcaggccccaagcgaaacaaaccagcctga
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