KEGG   Daucus carota (carrot): 108223221Help
Entry
108223221         CDS       T05350                                 

Definition
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03030  DNA replication
dcr03410  Base excision repair
dcr03420  Nucleotide excision repair
dcr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108223221
   03410 Base excision repair
    108223221
   03420 Nucleotide excision repair
    108223221
   03430 Mismatch repair
    108223221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dcr03032]
    108223221
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108223221
Enzymes [BR:dcr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108223221
    6.5.1.6  DNA ligase (ATP or NAD+)
     108223221
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108223221
DNA replication proteins [BR:dcr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    108223221
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     108223221
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108223221
   NER (nucleotide excision repair)
    Other NER factors
     108223221
   MMR (mismatch exicision repair)
    Other MMR factors
     108223221
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 108223221
NCBI-ProteinID: XP_017252848
LinkDB All DBs
Position
5
AA seq 797 aa AA seqDB search
MITLHSGLFLLPRTPNLSTIARGLSPILRPNSSFFLKPPLFTSPNLKFPMSSSRPSAFDA
LMSKARAAAKKKPQSEASPAKKRKTQELVSVKEVENASLDDAHQVFDKKSKQENVVKCGD
NVGTEVLANGCKEGKVNLSLDEKLAVKKAEAVSLDESIAQLKNKPANFDPKKAAFWGEGK
KVPFSFVTRVFDAVDKESGRIVITEIVCNMLRTVIQTSPDDLLPVVYLLANRIAPAHEGL
ELGIGDASIIKALAEACGCNEAQIRKQYKDLGDLGLVAKASRSSQSLMRKPEALTVTKVF
NTFQLIAKESGKDSQEKKKNHIKALLVAATDFEPLYMIRLLQTKLRIGLAEQTLLAALGH
AAYYSEKRFKPPANIDSPSEEAAKIVKQVYSVLPVYDKIIPAILTGGVWDLPKACCFTPG
IPIGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGK
FPDVVSALSRLKKSSVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVMISDIKVEVCI
FAFDILYLNGQTLLQEQLNVRKEHLYKSFEEEPCYFQFATAMTSTDLEEIQKFLEDSVDA
SCEGLIIKTLSRDATYEPSKRSNNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGA
FLLACYDSSSEAYQTICKIGTGFTEQVLEERSTSLRSKVIPKAKSYYRYADKISPDVWFE
TTEVWEVKAADLTISPVYCAAIGIVDSEKGISLRFPRLVRVREDKAPEQASSSEQVAEMY
KAQKHTQKHYEDDDKDE
NT seq 2394 nt NT seq  +upstreamnt  +downstreamnt
atgattacactccattcaggactctttctccttcctcgcacacccaatctctccactatt
gcgcgtggtctctctccgattctcagacccaattcgtcattttttctcaaaccccctctt
tttacaagccctaatttgaaattccccatgtcttcttcacgcccttcggctttcgatgct
ttaatgtcaaaagctcgagccgctgcgaagaaaaaaccccagtccgaggcttctccagcc
aagaaacgcaagacccaggagttagtttctgtaaaagaggttgagaacgcgagtttggat
gacgcgcatcaggtgtttgataaaaagagtaaacaagaaaatgttgtgaaatgtggtgat
aatgtgggtactgaggttttggcaaatgggtgcaaggaaggtaaggtaaatttgagtctg
gatgagaaattggcggttaagaaggccgaggctgttagtttggatgagagtattgcacag
ttgaagaataagccggcgaattttgatccaaagaaagctgcattttggggggagggtaag
aaagttccgttttcgtttgtgactagagtgtttgatgctgttgacaaggagtcagggaga
attgtgattactgagattgtgtgtaatatgttgaggactgtgatacagacgtcaccggat
gatttgcttccggttgtttatcttttagcgaatcggatcgcacctgctcatgaagggttg
gagcttggaattggggatgcgagtattattaaagcgctggctgaagcttgtggatgcaat
gaagctcagattaggaagcagtacaaagatttgggagatttgggattggttgcaaaagcc
agccgctcatcacagtctttgatgcgcaaacctgaggcattaacagtcactaaggtcttt
aacacatttcagctcattgccaaggaatctggcaaggatagtcaagagaagaaaaagaac
catatcaaggcactccttgttgctgctactgattttgagcctctgtatatgatccgctta
ctgcagacaaaattacgaattggtttggcagagcaaactctattggctgctctgggtcat
gctgcttattacagtgaaaagcgtttcaaacctcctgcaaatatagattctccttcagaa
gaggctgcaaagatagttaaacaagtttactctgtgcttcccgtctatgacaaaataatc
cctgccatccttactggtggtgtatgggatctcccgaaggcatgctgttttacacccggg
attcctattgggcctatgctagcaaaaccaacgaaaggagtgtctgagattttggataag
tttcaagatatggaattcacatgcgaatacaagtatgatggagaacgtgctcagatacat
tacttggagaatggttcagttgagatttacagtcgaaatgctgaaagaaatacgggaaag
tttccagatgttgtttctgctctttcaagactaaagaagtcatctgtttcatcatttgtt
ttggattgcgagcttgtcgcttatgaccgtgagaaaaagaaaatcttacctttccaggtt
ttaagcacacgtgcccgcaaaaatgtaatgatcagtgacatcaaagttgaagtttgcatt
tttgcatttgatattctttacctgaatggtcagacacttctacaggagcagcttaatgtt
cgtaaggaacatctgtataagtcatttgaggaagaaccctgctattttcagtttgctaca
gcaatgacatccactgatcttgaggaaatacagaagtttcttgaggattctgtcgatgca
agctgcgagggactgattatcaaaacattaagtagagatgctacatatgaaccttcaaag
aggtcaaataactggctcaaactaaagaaagattacatggaaagtattggcgattcactt
gatctagtacctattgctgctttccatggacgagggaaacgaactggtgtatatggcgct
tttctgcttgcttgttatgatagcagcagcgaagcatatcaaaccatttgtaaaatcggc
actggatttactgaacaagtgcttgaggagagatctaccagtctacgttctaaagtgatc
ccaaaggcaaagtcctactatcgttatgcagataagatttctccagatgtatggtttgaa
acaaccgaggtttgggaggtcaaagctgcagatttgaccatcagtcccgtctattgtgct
gccatcgggattgtggattctgagaagggcatctctctccgatttccacggctggttcgt
gtacgagaagacaaggctccagagcaagcttcatcatcggaacaggtagctgaaatgtat
aaagctcaaaagcacacccaaaagcactacgaagatgatgataaggacgagtga

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