Daucus carota (carrot): 108227340
Help
Entry
108227340 CDS
T05350
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108227340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108227340
Enzymes [BR:
dcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108227340
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108227340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
108227340
NCBI-ProteinID:
XP_017257918
LinkDB
All DBs
Position
6:31099645..31117260
Genome browser
AA seq
1638 aa
AA seq
DB search
MALSNEVTSESVAAVQFSFMSAEDVRKHSVKQITNPILLDPIAEPIPGGLYDPALGPYDL
NKICKTCGQRCNDCPGHCGHIELVSTVFNPLLFDKLYNIIARTCFTCFRFRMDEEEVKLC
ISKLEMIAKGDIIGARRLDEGGVLDTSTSPEDGETSDFQDPNTWSSLQYTESISVLKKFF
KPRPTACKHCKAKNPKITKPTFGWFYMSGLSAADARANIIRASGKTISSVEANSNEDTYV
AEIETVESESCMTTSVETEDTRNQRHVQTGKGFSPHSYKQKNTLSRPFLPSEVHATLEQL
WANESAILSYICGVQHESPKLTNGQAPSHSMFFIDALLVPPTKFRPPAVTADSVMEHPQT
GHIIKVLNANIALCNARANNSEPSIIVRRWLDLQQSINLMFDSKTSMSRSATPGICQLLE
KKEGIFRQKMMGKRVNHSCRSVISPDPYLAVNEIGIPPYFALRLTYPVKVTPWNAQKLRE
AIINGPEIHPGATNFVDKVSNSKLPLKKKGRISVSRKLSSSRGEASTKSHEMEGKIVFCH
MKDGDVVLVNRQPTLHKPSIMAHIVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHLPQD
EVSRAEAYNIVNANNQYIVPTRGDTVRGLIQDHIGAAVLLTMKDTFLTREQYDQLLYSSG
VFSAGPSLSSKSLSKKISKVESYGLQPVLPAVWKPKPLWTGKQVITSLLNHLTRGCKPCT
LENEGKIPYQYFSRNSSNNQLSKDEEASAENKVLIRRNELVRGVIDKAQFGKYGLVHTVQ
ELYGSDTAGILLSALSRLFTCFLQMHGFTCGVDDLILLPQYDVLRKEELEGEDVGEEVHC
DFVNFKRGKIGPKELQYEIEKIMRNNGESAVARLDGKMKNELREKGSKINKELLLNGLYK
PFPKNCISLMTISGAKGSSVNFQQISSSLGQQELEGKRVPRMTSGKTLPSFSPWDFSSRA
GGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLECLKVCYDYTV
RDADGSIVQFCYGEDGVDVHQTSFLNKFEALAKNQEIIGQKFHHKLEYNAYIDKLPNKLK
ERVDELIRTSLKGQFLEQLKQQDLLMLMKQKYISSLAQPGEPVGVIAAQSVGEPSTQMTL
NTFHLAGRGEMNVTLGIPRLQEILMTATSEIKTPIVTCRLLEEKSKDDAKALVAKLKKVT
VADIIESVEICVVPLYVYKDEICRLYKLKIKIKKHELVSEEDCRETLEITYLRELEDAIE
NHVQLLARISGIKDFTENIESMSASQTRDAVSGNKSQGNDDDDENGDNEGDDFGFDAQKR
KQQASDEIDYEDGIDGKTTEVELSTEVESEIDQDDDEIESSIGHVEDVDVEDEPSNVSYD
KGLITEPTSTDRKAQSKSKKKKRGNLARKETDRSCFVKTEGQRYEVHFRFKDEPHILLSQ
IVQKAAKKVPLIGSGKIEHCQQLAYDVLEKQVLWQKEENGAAEVQKDLSNLCALKVAGVN
LTALWEMQDVLDVNHIYSNNIHLMLKTYGVEVARKTIIKEVQDVFKIYGVEIDYRHLSLI
ADYMTHSGEYRPMSRHGMISESLSPLMKMSFETCSKFIVEAASHGQTDNLETPSSRICLG
LPVKLGTGSFDLMQNLQL
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atggcgctatcaaacgaggtgacgtctgagtcggtagcggctgttcagtttagtttcatg
tcagctgaagatgtcaggaagcacagtgttaagcagattacaaaccctattttgcttgac
cctatagctgaacctattcctggaggactttatgacccggcattgggtccctatgattta
aacaaaatttgtaaaacatgcggacagagatgtaatgattgcccgggtcattgtggtcat
attgaacttgtttcaactgtctttaatcccttgctctttgataaactttacaatatcata
gcacgcacgtgtttcacttgcttcagatttagaatggatgaagaagaggtcaagttatgc
atttcaaaattggaaatgattgcaaaaggtgatattattggggcaagaaggttggatgaa
ggaggtgtactagatacatccaccagtccagaagacggcgaaacttctgattttcaggac
ccaaatacttggtcttctcttcaatacaccgagtcaatttcggtcctgaaaaagtttttc
aagccgaggcctactgcctgcaagcactgcaaagctaaaaatcccaaaatcactaaaccc
acttttggatggttctatatgagtggcttgtctgctgccgatgccagagcaaatattatt
agggctagtggtaaaacaatatcctctgtggaagcgaattccaatgaggatacatatgta
gctgaaattgaaactgttgaatctgaatcatgtatgactacctctgttgaaacagaagac
actagaaaccaaaggcatgtacaaacaggaaagggattttctcctcattcttataagcag
aagaatacattatcgagaccatttttaccatcggaagttcatgctacattagaacaacta
tgggcgaatgagagtgccattctctcatatatttgcggtgttcagcatgagagtcctaaa
ttaacaaatggacaggcaccaagtcactccatgtttttcattgatgcccttttagtacct
cctactaaattccgtcctcctgccgtaactgctgattctgtgatggagcaccctcagact
ggtcacataatcaaggttctaaatgcgaacatagctctttgtaatgctcgtgccaacaac
tctgaaccgtccatcatagttcgtcgctggttggatcttcaacagtcaattaatcttatg
ttcgatagcaagacatctatgagccgaagtgctactcctggaatatgccagctgctggag
aagaaggagggcatcttccgtcagaaaatgatggggaagagggtgaatcattcatgtcgt
tctgttatatccccggatccatatttagcagttaatgaaattggcattcctccatatttt
gcattgaggttaacctatccagtgaaagtgactccatggaatgcccaaaaattgagggaa
gctatcatcaatggccctgaaatccatcccggggcaacaaactttgttgataaagtctcc
aatagcaaactgcctttaaaaaaaaagggtcgtatttctgtatctaggaagttatcatct
tcaagaggtgaagcatccacgaaaagccacgagatggagggaaagattgttttttgccac
atgaaggacggggatgttgtgcttgttaatagacagcctacacttcacaagcctagtatt
atggcacatatagttcgtgtattaccgggggagaaaactattcggatgcattatgcaaat
tgcagtacctataatgctgattttgatggtgatgagatgaatgttcatctgcctcaagat
gaagtttcacgtgctgaagcttataacattgtaaatgctaataatcagtatattgttcca
acaagaggtgatactgtcagaggcttgattcaggatcatattggagctgctgttcttttg
acaatgaaggatacatttctgactcgagagcagtatgatcaactgctctacagctctggt
gtattttctgctggacccagtttatcttctaaaagcctgtccaagaaaatatctaaagta
gagtcctatggtttacagcctgtcctgccagctgtttggaaaccaaagcctctttggact
ggaaagcaggtgattacttcactgttaaatcatcttactcgggggtgtaaaccatgcacc
cttgagaatgaaggaaagatcccataccaatatttttcaagaaacagcagtaacaatcaa
ctgagcaaagatgaagaggctagtgccgaaaataaggtgttaattagaagaaatgaactt
gttcgtggagttattgacaaggcacagtttggcaagtatggtctggttcacacagtgcag
gagctatatggttccgatactgcaggcatattgctttctgcacttagtcgcttatttaca
tgtttcttacagatgcacggtttcacgtgtggggtagacgacctgatattattaccacag
tacgatgttctaaggaaggaggaacttgaaggagaagatgttggcgaggaagttcattgt
gattttgttaatttcaaacgaggcaagataggtccaaaagagctgcaatatgaaattgaa
aaaataatgcgtaacaatggggaatctgcagtagcacgcttagatggaaagatgaaaaat
gaactgagggaaaagggttcaaaaataaacaaggaattgttgcttaatggcctctataaa
cccttcccgaaaaattgcatttctcttatgacaatcagtggagcgaagggtagttcagtc
aattttcaacagatatcttcttcactgggtcaacaagagttagaaggaaagcgtgttcct
cgaatgacctctgggaaaaccttacccagcttttctccctgggatttttcatctcgagca
gggggctatattactgatcgcttccttactggtcttcgtcctcaagagtattacttccac
tgcatggctggtcgtgaagggttagttgatactgcagtcaaaacatctcgtagtggatat
ctgcaaaggtgcctggttaaaaatctcgagtgccttaaagtttgctatgactatacagtc
cgggatgcagatggttctattgttcagttttgttatggtgaagatggtgttgatgtacat
cagacgagctttctcaacaaattcgaggcactagcaaagaatcaagagattataggtcag
aaatttcatcataagcttgaatacaatgcatatattgataagttgcctaacaagctaaaa
gaaagagtggacgagctgattagaacatcattaaaggggcaatttctggaacaattgaag
cagcaggacttgttaatgttaatgaaacaaaagtatatctcaagtctcgcacaaccagga
gaaccagttggagtgattgctgcacaatctgtgggtgaaccatcaacacaaatgacgctg
aacactttccatcttgctggtcgcggagaaatgaacgttacccttggcattccacgttta
caagaaatattgatgactgcaacaagtgaaatcaagactcctattgttacatgccgtctg
cttgaggagaagtcaaaggatgacgccaaggcccttgtggcaaaattgaagaaggtcact
gttgcagatataattgagagcgtagagatatgtgttgtaccattatatgtttataaggat
gaaatctgcagattgtataagcttaagattaagattaaaaagcatgaacttgtttctgaa
gaagactgtcgagaaacacttgagattacttatttgagggaattggaggatgccatagaa
aaccatgtccaattgcttgcaagaatcagtggcatcaaagattttacagaaaatattgaa
tcgatgagtgcaagtcagacaagggatgctgtttcaggcaacaaatcacaaggcaatgat
gacgatgatgagaatggtgataatgagggtgatgattttggatttgatgctcaaaaaaga
aaacaacaagcttcagatgagatagattatgaggatggtattgatggtaaaacaactgaa
gtggaattatcgactgaagttgaaagtgagattgatcaggatgatgatgagatagagagt
agcattggtcatgttgaggatgttgatgtggaagatgaaccatcgaatgtgtcatatgac
aaaggtttgataacagaacctacgtcaaccgatagaaaggcccaatcaaaatcaaagaaa
aagaaaagggggaatttggcgaggaaggagacagataggtcgtgctttgtgaaaactgaa
ggacaacgttatgaagtccatttcaggttcaaagatgaaccacatatcttgttgtctcag
attgtccagaaggctgccaagaaggttcctctcattggttctgggaagattgaacactgt
caacaacttgcatatgatgtacttgaaaagcaagttttgtggcagaaggaagaaaatggt
gctgcagaagttcaaaaggatctgtctaatctttgcgctctgaaagttgctggagtgaat
ttaactgcattatgggagatgcaggatgtacttgatgttaatcatatatattcaaataat
atacatcttatgctgaaaacctatggagtggaagttgccaggaagactataattaaggag
gtgcaggatgtgttcaagatttacggagtagagattgattataggcatttaagccttata
gcagattacatgacccactctggtgagtatagacctatgagcagacatggaatgatatct
gaatcactatcacctcttatgaagatgtcttttgagacctgttccaaattcatagtagaa
gctgcatctcatggacagactgataacttggagacaccttcatcaagaatctgtcttggc
ttaccagttaagttgggtaccggttctttcgatctgatgcagaacctacagttatag
DBGET
integrated database retrieval system
