KEGG   Dendrobium catenatum: 110095953Help
Entry
110095953         CDS       T05027                                 

Definition
(RefSeq) DNA ligase 6 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dct  Dendrobium catenatum
Pathway
dct03030  DNA replication
dct03410  Base excision repair
dct03420  Nucleotide excision repair
dct03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110095953
   03410 Base excision repair
    110095953
   03420 Nucleotide excision repair
    110095953
   03430 Mismatch repair
    110095953
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dct03032]
    110095953
   03400 DNA repair and recombination proteins [BR:dct03400]
    110095953
Enzymes [BR:dct01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110095953
    6.5.1.6  DNA ligase (ATP or NAD+)
     110095953
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     110095953
DNA replication proteins [BR:dct03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    110095953
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     110095953
DNA repair and recombination proteins [BR:dct03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     110095953
   NER (nucleotide excision repair)
    Other NER factors
     110095953
   MMR (mismatch excision repair)
    Other MMR factors
     110095953
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_N DNA_ligase_A_M DRMBL Lactamase_B_2 UBA_4 RMMBL
Motif
Other DBs
NCBI-GeneID: 110095953
NCBI-ProteinID: XP_020677345
LinkDB All DBs
Position
Unknown
AA seq 1130 aa AA seqDB search
MDAETLTLTTSDLFLSSFGTFAADSPQLLPPKSFELLSQSSSLPSVPSLVPTSKLIPNSC
FIVDGFRTAGDFSISYFLSHFHSDHYTGLSPNWYRGIIFCSETTASLLVEILKVSPLFVY
ALPLNKTVTIDGSNVTLVDANHCPGAVQFLFEVGLERYIHTGDCRFCDSMKLDPFLQKFV
GADAVFLDTTYCNPKFVFQSQEESIEYVVKTIQRTKEENKGSAKSVLFLIATYIVGKERI
LLEIAQRCNCLVHVDGRKMRILSVLGFGDIGVFTEDSSASDVHVIGWNLLGEVWPFFRPN
FVKMREIMAEKGYSKAVGFVSTGWMHEVKKDGFAVRVKESLEIHLVPYSEHSSYDELREY
VRFLRPKRVVPTVGVDPEKLDGKHAASLQKYFRGLVDETANKNDFLMSFHQKAVKANETS
ENFQSTGMNDPAEPVYSEIIEDLALIMNKSREQKCSLGEATLMKEGGMEAATEELRNCLP
SWVNDDQIVSLIRCAEGDVVKAVSDFFERETEYYNHSSVSTQIRPINQLSPSDVKICEVV
DNNSNQDNNMAIKKLDMGSSSATKRKVSSTIKRAKKKGKIFPTLDSVGPKQSTITKFFGK
VAPISADVDGHVMSTSNVPLNMVKPLIVGSVEPYEQELDQFLQVINYCMERNAAATLMDK
AKGNIDVAVDMYYSTSDRPIFNAEVYQTAPRDCHAIKCTGQMKILSPEKSDILSMSVGET
SKDDANVTTVLLPIEKYSPIEHACWKAGEPAPYLHLARTFELAEQEKGKIKTSAMFCNMF
RSLLALSPGDVLPAVYLCTNRVAADHENMELNIGGGLVISALEEACGTSKSRIKEMYNVS
GDLGDVAQECRQTQKLLAQPRPISISNLFLMLRRISVETGSGSAARRKQIVVKLMRFCRE
MEMKFLVRTLVRNLRIGAMMKTILPALAQAVVLNCHSPMQHIGSCESLKPQLQGICAAVT
EAYNISPNLDLLVPSLLSGGIEFSASALTMEPGTPIPPMLARITNGISQVLKLFQNRAFT
CEFKYDGQRAQIHKLSSGSIRIFSRKMKESTSRFPDLITIIKEFCNPAHATFILDTEIVA
VDRKNGSKLMSFQELSSRERGSKDYSIAMDGIKVDICVFIFDIMFSNGER
NT seq 3393 nt NT seq  +upstreamnt  +downstreamnt
atggatgctgaaaccctaacactaacgacttctgacctcttcctttcttccttcggcacc
ttcgccgctgattcgcctcaactgctgcctcctaaatctttcgaattactttcccaatcc
tcctctctacccagtgtaccctcgcttgtaccaacttccaagcttattcctaactcctgt
ttcatcgtcgatggctttcgaacggccggagatttttcaatctcctacttcctttcccat
ttccactcggaccattataccggcctcagccctaactggtaccgtggcatcattttctgc
tctgagaccaccgcttcccttctcgtggaaatactcaaagtttctcctctctttgtctat
gccctacctcttaacaagactgtcacgattgatggaagtaatgtcactttggtggacgca
aatcactgtcctggtgcagtccaattcctgtttgaagttggactagagaggtatattcac
actggtgactgcagattctgcgactcaatgaaacttgatccatttttacagaaatttgta
ggcgctgacgctgttttcttggataccacttactgtaatcctaaatttgtgttccagtct
caagaggaatcaattgaatatgttgtaaaaactattcagagaaccaaggaagaaaataag
ggatcagctaaatcagtattgtttcttattgctacatatattgttggaaaagaaaggatt
ttgcttgagatcgctcaaagatgcaattgcctagtccacgtggatggcagaaagatgagg
attttgtcagtattagggttcggtgatattggtgtttttactgaggattcttcagctagt
gatgttcatgtgattggttggaacctgttaggtgaggtttggccttttttccgaccgaat
tttgtgaagatgagagagattatggcggagaaaggttattcaaaggctgtaggttttgtt
tcaactggatggatgcatgaggtcaagaaagatgggtttgctgtgagggttaaggaatct
cttgagatccatcttgttccatacagcgagcattcaagctatgatgagcttagagagtat
gtgaggtttttgaggccaaaacgtgttgtcccgacagttggtgttgatccagagaagctg
gatggcaagcacgcagcatctctgcagaagtatttcaggggcttggttgatgaaaccgct
aacaagaatgattttttgatgtccttccatcaaaaggctgtgaaagctaatgaaacgagc
gaaaactttcaatctactggcatgaatgatcctgctgaacctgtgtattcagaaataata
gaagatttagctctgataatgaacaagtcacgtgagcaaaaatgctctcttggagaagca
accttaatgaaggaagggggcatggaagctgcaacggaggagcttcgtaactgcttgcca
tcttgggtgaatgatgatcagattgttagcttgatcagatgtgctgaaggtgatgtagtt
aaagcagtttccgatttctttgaacgggaaactgagtactataatcactcaagtgtttca
actcaaataagaccaattaatcagcttagtccttccgatgtgaaaatttgtgaagtagtt
gataacaattcaaatcaagataacaacatggctattaagaagcttgatatgggaagttct
agtgcaacaaagcgaaaggtttctagcactattaagagggccaaaaagaaagggaagatt
tttccaactttagattcagttggaccaaagcaatctacaataacaaagttctttggtaaa
gttgcacccatatcagctgatgttgatggtcatgtaatgagtacttctaatgtgcccctc
aacatggtcaagccgcttatagttggttctgttgaaccatacgaacaagagttagatcag
tttcttcaggtgataaactattgtatggagagaaatgccgctgctactttaatggataaa
gcaaagggaaacattgatgtagcagtggatatgtattacagtacttctgatcgtccaatt
tttaacgcggaggtataccaaactgcccctagggattgtcatgccataaagtgcaccggg
caaatgaagattctttcgccagaaaaatcagatattcttagcatgtcggtgggggaaact
tcaaaagatgatgctaatgtcacaactgttttgctgccaattgaaaagtattcacccatt
gaacatgcatgctggaaggctggagagcctgcgccatatctccacctggctcgcactttt
gaattggcagagcaagaaaaaggcaagataaaaacatctgcaatgttttgcaacatgttc
agaagtttgcttgctttatcacctggtgatgtgctgccggcagtatatctatgcacaaac
agggttgctgctgatcatgaaaacatggaattgaatattggtggtggtttggttatttct
gcattggaagaagcttgtggaaccagcaagtctagaattaaagaaatgtacaacgtttct
ggtgatcttggtgatgttgcccaagaatgccgacaaacccaaaagttacttgctcagcct
cgtcctatttcaataagtaacttatttttaatgcttagaaggataagcgtggaaacaggt
agtggcagtgctgctagaaggaaacagattgttgtgaaactgatgcgcttttgtagagaa
atggagatgaagtttcttgtccgaacgcttgttcgtaatttgcgcataggagccatgatg
aaaaccatcttaccagcattagctcaggctgtggttttgaactgccactcacctatgcaa
catattggatcttgtgaaagcctaaagccacaacttcaagggatttgtgcagcagttact
gaagcctataatatatctccaaatctggatttgcttgttccttctctcttgagtggagga
attgagttttctgcttctgctttgacaatggaaccaggcacacctattccacctatgctt
gctagaatcaccaatggtatcagccaagtactgaagttgttccagaatagagcttttaca
tgtgaattcaaatatgatggtcaacgtgcccaaattcacaaactttcatctggctccata
cgaatattttcacgcaaaatgaaagagtcaacttctagatttccagatttgataacaata
ataaaagaattttgtaatccggcccatgccacttttatactggacacggagattgttgct
gttgatcggaagaatggaagtaagctcatgtcttttcaggagttatcatcacgagaacgg
ggtagcaaagattattcaattgcaatggatggcataaaggtagatatttgtgttttcatt
tttgacatcatgttttcaaatggagagcggtaa

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